Pairwise Alignments

Query, 308 a.a., transcription regulator protein from Pseudomonas fluorescens FW300-N1B4

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  172 bits (437), Expect = 7e-48
 Identities = 106/297 (35%), Positives = 154/297 (51%), Gaps = 5/297 (1%)

Query: 1   MKNQLPPLNAVRAFAVAARHQSFRLAAEELHVSHSAVSRHIKLLEEYLGVLLFERRIRQS 60
           M  +LPPLNAV+AF  AARH SF  AAEEL V+ +AVS  IK LE++LG+ LF R+ R  
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  VLTPAGQRFYEQVSAGLSQIANAAAALKQHASLPTVKINVRPSFAVLWLTPRLADFVAQH 120
           +LT  GQ ++  +    +Q+++A   L   +++ ++ +++ PSFA+ WL PRLA F  ++
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKN 120

Query: 121 PGIKPQVITQTQAPDQARDGFDVVIRRGRDDWAPAIEARPLFEDELLLVAAPSLIE-RLP 179
           P I  ++           D  DV I  G+  W P + A  L  + L+ V +P L+    P
Sbjct: 121 PDIDVRIKAVDSEEGSLTDDVDVAIYYGQGSW-PGLRADKLRNEVLIPVCSPMLLNGHKP 179

Query: 180 LEDLTSLSRHTLLTVKARREDWHNWAMHFGQSQSATQVTRQFDHMHLALQAAVDGQGIAL 239
           LE    L  HTLL     R DW  W    G +         F H  L LQAA  GQG+AL
Sbjct: 180 LETPADLKHHTLLH-DMSRHDWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVAL 238

Query: 240 CPTSLLGTHLSSGRLICPLPELRLPLPRYYYGVAPDVTAQTRV--FVEWMFARIAQD 294
             + L    + +GRL+ P  E+ +    YY     +     ++  F EWM    A++
Sbjct: 239 GYSVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWMLDMFAEE 295