Pairwise Alignments

Query, 308 a.a., transcription regulator protein from Pseudomonas fluorescens FW300-N1B4

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  177 bits (450), Expect = 2e-49
 Identities = 110/305 (36%), Positives = 156/305 (51%), Gaps = 5/305 (1%)

Query: 1   MKNQLPPLNAVRAFAVAARHQSFRLAAEELHVSHSAVSRHIKLLEEYLGVLLFERRIRQS 60
           M  +LPPLNAV+AF  AARH SF  AAEEL V+ +AVS  IK LEEYLG+ LF R+ R  
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSL 60

Query: 61  VLTPAGQRFYEQVSAGLSQIANAAAALKQHASLPTVKINVRPSFAVLWLTPRLADFVAQH 120
           +LT  GQ ++  +     Q+A+A   L   +++ ++ ++  PSFA+ WL PRLA+F   +
Sbjct: 61  LLTEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENN 120

Query: 121 PGIKPQVITQTQAPDQARDGFDVVIRRGRDDWAPAIEARPLFEDELLLVAAPSLIE-RLP 179
           P I  ++           D  DV I  G  +W P + A  L  + L+ V +P L+    P
Sbjct: 121 PDIDVRIKAVDDETSSLTDDVDVAIYYGMGNW-PGLRADKLRNEVLIPVCSPMLLSGPKP 179

Query: 180 LEDLTSLSRHTLLTVKARREDWHNWAMHFGQSQSATQVTRQFDHMHLALQAAVDGQGIAL 239
           L   + L  HTLL   + R DW  W    G +         F H  L LQAA  GQG+AL
Sbjct: 180 LSQPSDLKHHTLLH-DSSRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVAL 238

Query: 240 CPTSLLGTHLSSGRLICPLPELRLPLPRYYYGVAPDVTAQTRV--FVEWMFARIAQDELH 297
             + L    + +GRL+CP PE+ +    YY     +     ++  F +WM     ++   
Sbjct: 239 GYSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWMLDMFEEESRS 298

Query: 298 WQTPG 302
              PG
Sbjct: 299 ELLPG 303