Pairwise Alignments

Query, 177 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N1B4

Subject, 171 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog from Pseudomonas stutzeri RCH2

 Score =  126 bits (316), Expect = 2e-34
 Identities = 67/155 (43%), Positives = 98/155 (63%), Gaps = 3/155 (1%)

Query: 9   LSELYRGHHGWLFGWLRKKLGCPDNAADMAHDTFVKLLGLD-TLPTLQEPRAYLLVAANR 67
           L  LY  HHGWL GWLR++LGC   AAD+A DTFV+++  D  +  ++EPRAYL   A  
Sbjct: 12  LHRLYSDHHGWLNGWLRRQLGCSQRAADLAQDTFVRVMTKDEDMGAIREPRAYLHTIAKG 71

Query: 68  LLINQYHRRRVEEETLRSMVVLLDQQAQQGPEQIIAVRQLLGKVLLLLLEELDEKPRKAF 127
           LLIN + RR++E+  L ++ +  +  A     Q + V  LL   +  +L +L  K R+AF
Sbjct: 72  LLINHWRRRQIEQAYLDALALQPELVAPSPESQALIVETLL--QIDAMLAQLPAKVRRAF 129

Query: 128 LMARVDGCSYAEIARHLQVSESSVKQYLAKSLAHC 162
           LM+++ G +YA IA  L VSE  VK+Y+A+++ HC
Sbjct: 130 LMSQLQGMTYAAIAAELGVSERMVKKYMAQAMLHC 164