Pairwise Alignments

Query, 452 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N1B4

Subject, 456 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score = 94.4 bits (233), Expect = 7e-24
 Identities = 106/436 (24%), Positives = 189/436 (43%), Gaps = 16/436 (3%)

Query: 17  FLAPMVLSNFLQSMSGTINSIYIGQMLGTQSLAAVSGMFPVVFFFIALVIGLGAGAGVLI 76
           +  P +LS  +  +   I+ +++G  LG   LA +   +PV     A+   +G GA  L+
Sbjct: 28  YAIPTILSMVVTGVYVAIDGMFVGHYLGEVGLAGMMLAYPVGAILYAVGALIGMGAASLV 87

Query: 77  GQAWGARELHLVKAIAGSTLLLGAMIGLVAAVLGSVFARPALQGLGTPVDVLDDAVAYA- 135
               G +++   + + G+   L  + G   A+LG+ +++  L  LG   +VL  A  Y  
Sbjct: 88  SINLGLKDVARARHLLGNAFTLCLLAGTGLALLGTRWSQTILIWLGAEGEVLTSAEQYLF 147

Query: 136 -HVMMWILPSLLVFVLFTQLLRGVSDTVSPLLALVVSTCVGLALTPALILGWLGLPPMGI 194
            +  + + P L   + FT LLR         L L++S C+ + L   LI+ +    P G+
Sbjct: 148 WYFALGVFPVLA--IAFTALLRNDGRPGFVTLVLILSGCLNVLLDWLLIVVF----PYGL 201

Query: 195 QSAAWAGLAGNLAAMVWLAWRLIRKGHPLAPDREMFASMRLDMDILGKVLRIGLPTGLQM 254
             AA A +       +        K   L  +   +  MRL++D    +LR+G+P+ L  
Sbjct: 202 AGAAIATMICQAFTALACLQHFFTKRTRLGIN---WQQMRLNLDHCSNILRVGVPSFLMN 258

Query: 255 VVLSL-SELVILALVNQHGSQATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRI 313
           + LS+   L  +A +   G    AAYG V+            IA     L +   GA R 
Sbjct: 259 LYLSIVLTLHNMAFLWVGGPIHVAAYGVVSYAEALFYLIFEGIAFGTQPLFSFNTGAKRF 318

Query: 314 ERMGPILRTGLLINVCLTGGLVVLGYLLSHWLLGLFLTDDSTRA-MAEHLLHIMLWSLLV 372
           +R+   LR  +++ +      VV  Y    +L+ +F  D+S  A +A   + +  W L  
Sbjct: 319 DRVFETLRLVIIMTLVTALAGVVFIYWAPEYLVYIFAGDNSELAPVAIEGMRLYFWGLPF 378

Query: 373 FGFQAIVGGIMRASGTVLVPVVVTIVCVVGVQLPVAYLLDARFGLQGVWMAFPVAYLGML 432
            G   +     +A        ++T   +V + + V YL    FG+ GVW++  +A   +L
Sbjct: 379 EGLILVGAAFFQAINRPKEASILTGSKLVLIAM-VLYLFAWLFGVTGVWIS--LASCSLL 435

Query: 433 MFQTLYYKMVWQHQKI 448
           +   + Y +    +K+
Sbjct: 436 LTIWMVYTLTKLSKKL 451