Pairwise Alignments

Query, 452 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N1B4

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  105 bits (261), Expect = 4e-27
 Identities = 97/395 (24%), Positives = 181/395 (45%), Gaps = 8/395 (2%)

Query: 34  INSIYIGQMLGTQSLAAVSGMFPVVFFFIALVIGLGAGAGVLIGQAWGARELHLVKAIAG 93
           +++ +I Q LGT++LAA+S  FPV     ++ IG+GAG    +G+  G+      K    
Sbjct: 36  VDTFFISQ-LGTEALAAISFTFPVTLIVSSIAIGIGAGVSTNLGRLIGSGNSPKAKVFLH 94

Query: 94  STLLLGAMIGLVAAVLGSVFARPALQGLGTPVDVLDDAVAYAHVMMWIL--PSLLVFVLF 151
             LL+   +    ++LGS+F  P    LG   D L   +   ++ +W L  P L++ ++ 
Sbjct: 95  DALLITFWLIAALSLLGSLFIGPLFTLLGANDDSL--PLIRDYMFLWYLGAPLLVLLMVG 152

Query: 152 TQLLRGVSDTVSPLLALVVSTCVGLALTPALILGWLGLPPMGIQSAAWAGLAGNLAAMVW 211
            Q LR   DT SP   + ++  + L L P LI G    P + IQ AA A L   + A+  
Sbjct: 153 NQGLRATGDTKSPAKIMALAAVINLVLDPLLIFGLGPFPRLEIQGAAIATLISWVVALSL 212

Query: 212 LAWRLIRKGHPLAPDREMFASMRLDMDILGKVLRIGLPTGLQMVVLSLSELVILALVNQH 271
             + LI K + +  D   F   R+  +   ++  I  P  L  ++  ++  +I+A++ + 
Sbjct: 213 SGYLLIIKRNLV--DFAEFNLERIHCN-WRQLAHIAQPAALMNLLNPVANAIIMAMLARI 269

Query: 272 GSQATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRIERMGPILRTGLLINVCLT 331
              A AA+GA T++ + +    ++++ +     AQ +GAG+ ER    L   L   +   
Sbjct: 270 DHSAVAAFGAGTRLESVLLIAVMALSSSLVPFIAQNLGAGQTERARDALMLSLRFVLVFQ 329

Query: 332 GGLVVLGYLLSHWLLGLFLTDDSTRAMAEHLLHIMLWSLLVFGFQAIVGGIMRASGTVLV 391
             + +   L++  +  LF  D          +  +  +    G   +    + A    + 
Sbjct: 330 TLIYLPLALMATPIAQLFSKDPQVIEWLSFYIIALPAAYGPLGMVILTATSLNAYHRPMS 389

Query: 392 PVVVTIVCVVGVQLPVAYLLDARFGLQGVWMAFPV 426
            +V+ +  +  + LP+A L     G++G+ +A P+
Sbjct: 390 SLVLNVCRLFLLLLPLAALGSYLGGVKGLLLALPI 424



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 11/168 (6%)

Query: 240 LGKVL-RIGLPTGLQMVVLSLSELVILALVNQHGSQATAAYGAVTQIVNYVQFPALSIAI 298
           +G+VL  + LP  + ++ +    LV    ++Q G++A AA      +   V   A+ I  
Sbjct: 12  IGRVLLNMSLPNLIGILTILGFSLVDTFFISQLGTEALAAISFTFPVTLIVSSIAIGIGA 71

Query: 299 TASILGAQAIGAGRIERMGPILRTGLLINVCLTGGLVVLGYLLSHWLLGLF-LTDDSTRA 357
             S    + IG+G   +    L   LLI   L   L +LG L    L  L    DDS   
Sbjct: 72  GVSTNLGRLIGSGNSPKAKVFLHDALLITFWLIAALSLLGSLFIGPLFTLLGANDDSLPL 131

Query: 358 MAEHL----LHIMLWSLLVFGFQAIVGGIMRASGTVLVPVVVTIVCVV 401
           + +++    L   L  LL+ G Q      +RA+G    P  +  +  V
Sbjct: 132 IRDYMFLWYLGAPLLVLLMVGNQG-----LRATGDTKSPAKIMALAAV 174