Pairwise Alignments

Query, 452 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N1B4

Subject, 448 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 91.7 bits (226), Expect = 4e-23
 Identities = 103/427 (24%), Positives = 177/427 (41%), Gaps = 26/427 (6%)

Query: 7   QHPLWQTYLLFLAPMVLSNFLQSMSGTINSIYIGQMLGTQSLAAVSGMFPVVFFFIALVI 66
           Q P+ + +  +  P + S  +  +  TI+ I++G  LG   LA +   +PV     A+  
Sbjct: 15  QEPIAKLFWRYTIPTIASMLVTGVYVTIDGIFVGHYLGETGLAGMMLAYPVGAILYAIGA 74

Query: 67  GLGAGAGVLIGQAWGARELHLVKAIAGSTLLLGAMIGLVAAVLGSVFARPALQGLGTPVD 126
            +G G+  L+    G   +   + + G+   L  + G   A++G VF+R  L  LG   +
Sbjct: 75  MIGMGSAALVSINLGQGNVAKARKLLGNAFSLCLLAGAFFALVGGVFSRDILIALGAEGE 134

Query: 127 VLDDAVAYAHVMMWILPSLLVFVLFTQLLRGVSDTVSPLLALVVSTCVGLALTPALILGW 186
           +L++A  Y      +    ++ + FT LLR   +   P +   V    G+  T    L W
Sbjct: 135 ILENANEYLFWYFALCHFPIISMAFTTLLR---NDGRPSMVTFVLILGGVLNT---FLDW 188

Query: 187 LGLP--PMGIQSAAWAGLAGNLAAMVWLAWRLIRKGHPLAPDREMFASMRLDMDILGKVL 244
           L +   P G+  AA A +       +            L  + E    M+L +D    + 
Sbjct: 189 LFIVVFPFGLAGAAIATMLSQAVTGLLCLQHFFGARTQLKINLE---QMKLKLDNCINIA 245

Query: 245 RIGLPTGLQMVVLSLSELVILALVNQ-----HGSQATAAYGAV--TQIVNYVQFPALSIA 297
           R+GLP+ L  + LS    ++L L N       G    AAYG V  T+   Y+ F  +++ 
Sbjct: 246 RVGLPSFLMNLYLS----IVLTLHNTAFLWVGGPLHVAAYGVVSYTEAFFYLIFEGIALG 301

Query: 298 ITASILGAQAIGAGRIERMGPILRTGLLINVCLTGGLVVLGYLLSHWLLGLFLTDD-STR 356
            T  I    A GAGR +R+         + +      +VL Y    WL+ LF  D+ S  
Sbjct: 302 -TQPIYSFNA-GAGRFDRVKQARNIAFSMTLLTAALGLVLIYSRPEWLVYLFAGDNPSLT 359

Query: 357 AMAEHLLHIMLWSLLVFGFQAIVGGIMRASGTVLVPVVVTIVCVVGVQLPVAYLLDARFG 416
            +A   +    W L + G   +     +A        ++T   ++ +   + Y     FG
Sbjct: 360 PVAIEGMRWYFWGLPMEGLILVGASFFQAINCSKQASILTGAKLILI-AAIIYCFAWAFG 418

Query: 417 LQGVWMA 423
           + GVW++
Sbjct: 419 VIGVWVS 425