Pairwise Alignments

Query, 452 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N1B4

Subject, 452 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  122 bits (306), Expect = 2e-32
 Identities = 110/408 (26%), Positives = 187/408 (45%), Gaps = 12/408 (2%)

Query: 35  NSIYIGQMLGTQSLAAVSGMFPVVFFFIALVIGLGAGAGVLIGQAWGARELHLVKAIAGS 94
           ++ +I Q LGT++LAA+S  FPV     ++ IG+GAG    +G+  G+      K     
Sbjct: 37  DTFFISQ-LGTEALAAISFTFPVTLIISSIAIGVGAGVSTNLGRLIGSGNAPQAKVFLHD 95

Query: 95  TLLLGAMIGLVAAVLGSVFARPALQGLG---TPVDVLDDAVAYAHVMMWILPSLLVFVLF 151
            LLL  ++    + LGS+F  P    LG   T + ++ D + Y +V     P L++ ++ 
Sbjct: 96  ALLLTFILIASLSALGSIFIEPLFSLLGANETSLPLIHDYMMYWYVG---APLLVLLMVG 152

Query: 152 TQLLRGVSDTVSPLLALVVSTCVGLALTPALILGWLGLPPMGIQSAAWAGLAGNLAAMVW 211
            Q LR   DT SP + + ++  + L L P LI G    P + IQ AA A L   L A+  
Sbjct: 153 NQGLRSTGDTRSPAMIMTLAAIINLILDPLLIFGIGPFPRLEIQGAAIATLFSWLVALSL 212

Query: 212 LAWRLIRKGHPLAPDREMFASMRLDMDILGKVLRIGLPTGLQMVVLSLSELVILALVNQH 271
             + LI K   L  +R  F   R+  +   K+  I  P  L  ++  L+  VI+A++   
Sbjct: 213 SGYLLIIKHRML--ERAAFDIDRMRAN-WSKLAHIAQPAALMNLINPLANAVIMAMLAHI 269

Query: 272 GSQATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRIERMGPILRTGLLINVCLT 331
              A AA+GA T++ + +    ++++ +     AQ +GAG+ +R    L   L   +   
Sbjct: 270 DHSAVAAFGAGTRLESVLLIVVMALSSSLMPFIAQNLGAGQPQRAKQALLLSLKFILVFQ 329

Query: 332 GGLVVLGYLLSHWLLGLFLTDDSTRAMAEHLLHIMLWSLLVFGFQAIVGGIMRASGTVLV 391
             L +     +  L  LF TD          + ++  +    G   I    + A    + 
Sbjct: 330 TLLYIPLAFFAQPLASLFSTDPQVLEWLSFYILVLPCAYGPLGIVIIFATALNAYHRPMS 389

Query: 392 PVVVTIVCVVGVQLPVAYLLDARFGLQGVWMAFPVAYLGMLMFQTLYY 439
            +V+ +  +V + LP+A L     G++G+ +A P+    +LM    YY
Sbjct: 390 SLVINLCRLVLLMLPLAALGSYIDGVKGLLLALPIT--NLLMGIACYY 435