Pairwise Alignments

Query, 452 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N1B4

Subject, 473 a.a., MATE efflux family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  108 bits (269), Expect = 5e-28
 Identities = 112/442 (25%), Positives = 177/442 (40%), Gaps = 56/442 (12%)

Query: 20  PMVLSNFLQSMSGTINSIYIGQMLGTQSLAAVSGMFPVVFFFIALVIGLGAGAGVLIGQA 79
           P +L    Q + G    +++   +     A++  +   +FF + + + L  GA   +GQA
Sbjct: 23  PQMLMMLFQFIIG-FTDVWVAGRINPDVQASLGIVNQCMFFLLVVAVALSNGAVAAVGQA 81

Query: 80  WGARELHLVKAIAGSTLLLGAMIGLVAAVLGSVFARPALQGLGTPVDVLDDAVAYAHVMM 139
            GA  L   +      L  GA+ G V A  G V A   L  L  P  ++  A  + HV +
Sbjct: 82  LGAGLLARARRYVSLILWGGALCGGVVAASGLVAADALLHVLMVPERIMPVASYFWHVYL 141

Query: 140 WILPSLLVFVLFTQLLRGVSDTVSPLLALVVSTCVGLALTPALILGWLGLPPMGIQSAA- 198
             LP+  +F +     R   D ++PLL +VV + V    +    LG  GLP  G    A 
Sbjct: 142 LTLPAHYLFTISNAAFRARKDVIAPLLTMVVVSVVNAVASAGFGLGLWGLPDFGYAGVAW 201

Query: 199 ---WAGLAGNLAAMVWL------------AWRLIRKGHPLAPDREMFASMRLDMDILGKV 243
              W+ LAG    +V L             WR IR G P                    +
Sbjct: 202 GTFWSVLAGAALNVVLLRRGGMVQGVSMPPWRWIRCGAPY-------------------L 242

Query: 244 LRIGLPTGLQMVVLSLSELVILALVNQ-----HGSQATAAYGAVTQIVNYVQFPALSIAI 298
           +++  P     V+  +  LV+ A+            A A   A  ++ + +  PA +  +
Sbjct: 243 VKVAAPAAAMQVLWHMGYLVLFAITGSLPAPADSVNALAGLTAGMRVESLIFLPAFAFNM 302

Query: 299 TASILGAQAIGAGRIERMGPILRTGLLINVCLTGGLVVLGYLLSHWL--LGLFLTDDSTR 356
           TASIL    +GAG  +      R GL + V   G + VL  LL  W+  L   LT D+  
Sbjct: 303 TASILVGHLLGAGLRD---DARRVGLRLLVIGCGSMTVLAALLWPWVPELSAILTPDA-- 357

Query: 357 AMAEHLLHIMLWSLLVFGF---QAIVGGIMRASGTVLVPVVVTIVCVVGVQLPVAYLLDA 413
           A+A   +  + ++L+   F      +GGIM  +G      +V       V+LP A+ +  
Sbjct: 358 AVAAQTVSYLRYNLVSIPFTVASMTLGGIMTGAGATFYNFIVYSSATWFVRLPCAWFMG- 416

Query: 414 RFGLQGVWMAFPVAYLGMLMFQ 435
                 VW      ++ ML+ Q
Sbjct: 417 ----HVVWRDAAGVFIAMLVSQ 434