Pairwise Alignments

Query, 299 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N1B4

Subject, 302 a.a., transcriptional activator NhaR (RefSeq) from Shewanella loihica PV-4

 Score =  211 bits (537), Expect = 2e-59
 Identities = 114/295 (38%), Positives = 173/295 (58%), Gaps = 6/295 (2%)

Query: 2   LNYRQLHYFWVVAKTGSIVRACEQLNLTPQTISGQISLLEQTYGIELFRRVGRQLELTEA 61
           LNY  L+YFW+V K GS+ +A E L LTPQT++GQI +LEQ     LF+RVGR LE TE 
Sbjct: 4   LNYNHLYYFWMVHKKGSVAKAAETLCLTPQTVTGQIRVLEQRLNGTLFKRVGRNLEPTEL 63

Query: 62  GRQTLPYAEQMFQLGGELELMLRAQPNEQQILFRVGVADVVPKSIVYRLIAPTMELSEPL 121
           G     YA++MF L  E+  +L  Q  +  ILF VG+AD + K++  R++   +     +
Sbjct: 64  GELVFRYADKMFSLSYEMLDILNYQ-KDNNILFEVGIADALSKALASRVLLSVVPSDGSM 122

Query: 122 RITCREDKLERLLADLAIQRLDLVISDSPMPSHLDIKGYSQKLGECGISFFATAELAARY 181
            + C E   E L+  L   +LD+++SD    S    +  S+KLGECG++FF+    +  Y
Sbjct: 123 HLACYEATHESLMERLRAHKLDMILSDCAGESLKYPEILSKKLGECGVAFFS----STTY 178

Query: 182 GQDFPRSLHGAPLLIPGPETVVRSRLQRWFAEQQIQPQIVGEFDDSALMQAFGQSGSGIF 241
            + FP  L    LLIPG  T +  +L  WF E  +   I+GEFDD+A+M+AFG    GIF
Sbjct: 179 DKPFPACLEEGKLLIPGKRTSLGQQLHHWFDENGLDVTILGEFDDAAMMKAFGFFKQGIF 238

Query: 242 IGPSVIADEVKRQCGVELIGQTDAVSESFYAISVERKIKHPGIVAITEGARRELF 296
           + PS+   ++     ++++G+TD + E ++ +  ER I+HP + ++ E    +LF
Sbjct: 239 VAPSIYKQDILAH-DMQILGETDDIKEVYHVMFAERMIQHPAVKSLLETDFSDLF 292