Pairwise Alignments

Query, 299 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N1B4

Subject, 302 a.a., transcriptional activator protein NhaR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  219 bits (558), Expect = 6e-62
 Identities = 123/298 (41%), Positives = 173/298 (58%), Gaps = 6/298 (2%)

Query: 2   LNYRQLHYFWVVAKTGSIVRACEQLNLTPQTISGQISLLEQTYGIELFRRVGRQLELTEA 61
           LNY  L+YFW++ K GS+ +A E L LTPQTI+GQI  LE      LF+RVGR LE TE 
Sbjct: 4   LNYNHLYYFWMIKKKGSVAKAAEALYLTPQTITGQIRALEDRLNGSLFKRVGRNLEATEL 63

Query: 62  GRQTLPYAEQMFQLGGELELMLRAQPNEQQILFRVGVADVVPKSIVYRLIAPTMELSEPL 121
           G     YA++MF L  E+  +L  Q  +  ILF VG+AD + K++  R++   +     +
Sbjct: 64  GELVFRYADRMFSLSYEMLDLLNYQ-KDNAILFEVGIADALSKALSSRVLLSVVPNDGSM 122

Query: 122 RITCREDKLERLLADLAIQRLDLVISDSPMPSHLDIKGYSQKLGECGISFFATAELAARY 181
            + C E   E L++ L   +LD+++SD    S    +  S+KLGECG+SFF+    A  Y
Sbjct: 123 HLACYEATHESLMSRLREHKLDMILSDCAGESLKYPEILSKKLGECGVSFFS----AETY 178

Query: 182 GQDFPRSLHGAPLLIPGPETVVRSRLQRWFAEQQIQPQIVGEFDDSALMQAFGQSGSGIF 241
             DFP  L    LLIPG  T +  +L RWF EQ +   I+GEFDD+A+M+AFG    GIF
Sbjct: 179 SADFPACLEQGQLLIPGRRTSLGQQLYRWFDEQNLNVSILGEFDDAAMMKAFGYLKRGIF 238

Query: 242 IGPSVIADEVKRQCGVELIGQTDAVSESFYAISVERKIKHPGIVAITEGARRELFTAM 299
           + PSV   EV    G+ L+G+T  V E ++ +  ER I+HP +  + E    +LF  +
Sbjct: 239 VTPSVYPQEVVSH-GMHLLGETLDVKEEYHVMFAERMIQHPAVKRLLETDFSDLFAGL 295