Pairwise Alignments

Query, 394 a.a., Lipoprotein releasing system transmembrane protein LolC from Pseudomonas fluorescens FW300-N1B4

Subject, 416 a.a., lipoprotein releasing system transmembrane protein LolC, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  295 bits (756), Expect = 1e-84
 Identities = 163/397 (41%), Positives = 243/397 (61%), Gaps = 12/397 (3%)

Query: 1   VSFISLTSMIGLALGVVVMIVVLSVMNGFDHEMRTRVLGMVPHATIES-GEPISDWQSLA 59
           +SFIS  S  G+ALGV V+I+VLS MNGF+ E+  R+LG++  A +    EPI+DW+++ 
Sbjct: 23  ISFISFASTAGIALGVAVLIIVLSAMNGFERELEQRLLGVISQADVVGVNEPIADWRAVE 82

Query: 60  AKVKQNPQVAAVAPFVQMQGLLTNNGKVSKVLLNAIDPVQERQVSIIDNFMQQGKLDDLA 119
               Q   + A APF++MQGL+   G    + +  IDP QE +VS +  FM       L+
Sbjct: 83  QTALQIEGITAAAPFIRMQGLVQKPGGFQGLAVVGIDPEQEAKVSTLSQFMSPETWQSLS 142

Query: 120 PGSFGIVIGDKAAAKLGVAVGDKLTFVAPEVTVTPAGMFPRMK--RFTVVGIFHVGAGEI 177
                IV+G+    KLG+ VGD L     ++    AG     K  RF V G++ +G GE+
Sbjct: 143 EDDNHIVLGESLLKKLGLEVGDTLALYVQDLDPEHAGSLRAAKSHRFVVSGVYRLG-GEL 201

Query: 178 D---GYLGITNLQDLAKLHRWQPDQVQGLRLKFDDLFQAPRMAWTIAQQLGEDTYYARDW 234
           +    Y+ +    ++  LH+     V G+R+    +F+AP     +   L +  Y + DW
Sbjct: 202 ELTTAYIPMRYAANILNLHQG----VTGVRISVTQVFEAPAKIRELGYALNQSVYIS-DW 256

Query: 235 TRTHGNLYQAIRMEKAMIGLLLLLIVAVAAFNIISTLVMVVNDKKGDIAILRTLGSTPGQ 294
           TRT G+LYQ I++ + ++ L+L+L++ VA FNI+STLVM V DK  +IAIL T+G +   
Sbjct: 257 TRTQGHLYQDIQLVRTIMYLVLVLVIGVACFNIVSTLVMAVRDKASEIAILMTMGLSRLS 316

Query: 295 IMAIFMVQGTVIGVVGTLIGAVVGIFAALNVSAAISALEGLIGHKFLNADVYFIDYLPSQ 354
           +M IFMVQG + G+VG  +G V+GI  A+N+SA    +E L+G + L+ADVYF+D+LPS+
Sbjct: 317 VMGIFMVQGALNGLVGCALGGVIGIATAINLSAIARDIEQLLGIQLLSADVYFVDFLPSE 376

Query: 355 VQSQDVLMVCAAALVLSFLATLYPAWRAARTQPAEAL 391
           +   DV +V A A V+S +ATLYPAW+A+R  PA+AL
Sbjct: 377 LHMADVSLVIATAFVMSLIATLYPAWKASRIGPAQAL 413