Pairwise Alignments

Query, 394 a.a., Lipoprotein releasing system transmembrane protein LolC from Pseudomonas fluorescens FW300-N1B4

Subject, 410 a.a., lipoprotein releasing system transmembrane protein LolE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  251 bits (640), Expect = 3e-71
 Identities = 146/396 (36%), Positives = 226/396 (57%), Gaps = 12/396 (3%)

Query: 2   SFISLTSMIGLALGVVVMIVVLSVMNGFDHEMRTRVLGMVPHATIESGEPISDWQSLAAK 61
           SFI+L ++ G+ LGV  +IVV SVMNG + +++ R+LG VP  T+ +  P+SDW   A K
Sbjct: 24  SFITLFAVSGIFLGVAALIVVSSVMNGLEGQLKQRILGAVPQLTVYTKAPLSDWTIAAEK 83

Query: 62  VKQNPQVAAVAPFVQMQGLLTNNGKVSKVLLNAIDPVQERQVSIIDNFMQQGKLDDLAPG 121
           +   P V  V P V  Q ++ +   +  V +  + P    ++S +      G   +L  G
Sbjct: 84  LTMLPGVQGVTPSVSTQAMVQSAANIRAVQVFGVFPELAEKLSAVAQHTYSGAFSELTSG 143

Query: 122 SFGIVIGDKAAAKLGVAVGDKLTFVAPE-VTVTPAGMFPRMKRFTVVGIFHVGAGEIDGY 180
            + +++G + A +L V+ GD +  ++ + V  +P G  P  ++F V  +F +G+ ++D  
Sbjct: 144 QYQVILGSELARQLKVSPGDTVRLLSGDGVVYSPLGPVPSQRKFLVSAVFEMGS-QVDAG 202

Query: 181 LGITNLQDLAKLHRWQPDQVQGLRLKFDDLFQAPRMAWTIAQQLGEDTYYAR--DWTRTH 238
           +   + QD  +L R   D++  LRL  +D F AP +A  + Q L      A   DW  T+
Sbjct: 203 VAYVHYQDAKRLMRQPSDEINQLRLYLNDPFTAPALAKDVQQILTAQGIEATTSDWRDTY 262

Query: 239 GNLYQAIRMEKAMIGLLLLLIVAVAAFNIISTLVMVVNDKKGDIAILRTLGSTPGQIMAI 298
           G+L+ A++MEK M+ L+L LIVAVAAFNI+S LVM+V DK  D+A+L+T G     +M I
Sbjct: 263 GHLFSAVKMEKNMMSLMLSLIVAVAAFNIVSALVMMVVDKTTDVAVLKTQGLRTSAVMGI 322

Query: 299 FMVQGTVIGVVGTLIGAVVGIFAALNVSAAISALEGLIGHKFLNADVYFIDYLPSQVQSQ 358
           F+VQG +  V+G  +G VVGI   LN++  ++ L    G   L A       LP ++   
Sbjct: 323 FVVQGLLNAVLGLALGLVVGILITLNLNGLMATL----GISILGAG----QMLPVKLALG 374

Query: 359 DVLMVCAAALVLSFLATLYPAWRAARTQPAEALRYE 394
            + ++    LV++ +ATLYPA RAAR QPA ALRYE
Sbjct: 375 QLSLIIVGTLVVTLVATLYPALRAARVQPATALRYE 410