Pairwise Alignments

Query, 896 a.a., COG0553: Superfamily II DNA/RNA helicases, SNF2 family from Pseudomonas fluorescens FW300-N1B4

Subject, 1161 a.a., SNF2-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  511 bits (1317), Expect = e-149
 Identities = 302/732 (41%), Positives = 420/732 (57%), Gaps = 71/732 (9%)

Query: 223  ALPESAGELYEMVNDSAWLTFTLNELPKLRTQGWELQIDEDFGFDLTAVEDWYATVEQAP 282
            A+ ES GE   +V   A     L  L  L  +GW++++     F   A   WY  V  A 
Sbjct: 440  AVTESLGEGLRLVPGEASEHVVL--LRTLSLKGWQIELVAKQRFVQVAANAWYGEVNSA- 496

Query: 283  ERDWFDLELGIIVNGERLSLLPILLNLMRSHTELLNPERLARRRDDELILVNIPQRRSTD 342
            ++DWF+L LG+ V G+R++LLP+L+NL+R         +L+R  +            S D
Sbjct: 497  DKDWFELSLGVEVEGKRVNLLPLLVNLIRQG-------KLSRDFNQATSGEQSGANGSAD 549

Query: 343  QGPLQVAL----------PFGRLKPVLATLGEFYLQEP--GETTLRLSKADATRLNPLEG 390
            Q P +VAL          P  R++ +LA L E + Q+P   +  L L++    R+  L+ 
Sbjct: 550  Q-PQEVALELESGAILTLPAARIQRILAVLDELFTQQPLNDQEKLVLARHHLGRIPLLDD 608

Query: 391  L------PLLWEGGEQIRTFAQRL-RDIKDHTA-----------VAPEGLNATLRPYQLE 432
                    L W G  ++R  A+ L R + +  +           V P+GLNA LRPYQ+E
Sbjct: 609  ALSQSEQALTWSGEAKLRQHAKALGRYLNEQQSRRADRLGTIDFVTPDGLNAELRPYQVE 668

Query: 433  GLSWMRSLRQLEVGGILADDMGLGKTLQTLAHILSEKNAGRLDRPCMVVMPTSLIPNWLD 492
            G++W++ +++   G ILADDMGLGKTLQTL  IL +K AG    P +V+ PTSL+ NW  
Sbjct: 669  GVAWLQFIKRHGFGAILADDMGLGKTLQTLCSILLDKQAGVTKAPVLVIAPTSLLSNWQR 728

Query: 493  EAAHFTPQLKVLALYGASRKKHFGDLADYDLILTTYALLPKDVERLAAQPLHVLVLDEAQ 552
            E A FTP L      G +R  +   L D D+++T+Y +L +D ERL     H ++LDEAQ
Sbjct: 729  EIAQFTPSLTSFVWSGRARHDNEQALTDVDVLITSYGILAQDAERLTKLNWHQVILDEAQ 788

Query: 553  YIKNPNSKAAHAARELNARQRLCLSGTPLENHLGELWSLFHFLLPGWLGDVKSFNRDYRV 612
             IKN  S+       L  + RLCL+GTP+ENHLGELWSLFHFL+PG+LG    F R ++ 
Sbjct: 789  TIKNSRSRITKLVNRLQTQHRLCLTGTPMENHLGELWSLFHFLMPGFLGTATQFQRQFKQ 848

Query: 613  PIEKRASDVRLQHLNGRIKPFLLRRTKEQVATELPPKTEIIHWVELNEAQRDVYETMRLA 672
            PIEK   D   Q L  R+ PF+LRRTK QVATELP KT I   +EL+++Q D+YET+RL 
Sbjct: 849  PIEKDHCDASRQRLAQRLAPFMLRRTKSQVATELPTKTVINTLIELSQSQSDLYETIRLT 908

Query: 673  MDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVN--------------------- 711
            + ++V+  + + G   ++++I  ALLKLRQVCC   ++N                     
Sbjct: 909  VAEQVQLALRQTGAKANRLMISNALLKLRQVCCHPAMLNLGQLGQVGETENSKVAISPEV 968

Query: 712  ---------DAALPSRGSTSGKLDSLMEMLEELFEEGRRILLFSQFTSMLSLIEDELKKR 762
                     D A     + S KL  L   L  + E+GR IL+FS FTSML LI ++L+++
Sbjct: 969  NLSQSVTGLDGAQDELNAESSKLAWLENKLPSMIEDGRNILIFSSFTSMLDLIAEQLERQ 1028

Query: 763  GVAYVILTGQTRDRRTPVKEFQSGKRQIFLISLKAGGVGLNLTEADTVIHYDPWWNPATE 822
             + Y +LTG++R R   ++ F+ G+  +FLISLKAGG GLNLTEAD VIH DPWWNPA E
Sbjct: 1029 QIGYEMLTGRSRHRDRIIERFRRGEVNVFLISLKAGGSGLNLTEADVVIHVDPWWNPAAE 1088

Query: 823  NQATDRAYRIGQEKPVFVYKMIARGTVEEKIQHLQKEKSDLAAGVLDGRKTGDWKLQSDD 882
             QA+DRAYRIGQ+KPVFVYK+I + TVEE+IQ LQ+ K  LA  +         ++  DD
Sbjct: 1089 EQASDRAYRIGQDKPVFVYKLICQNTVEERIQQLQQSKQALAQSMYQTESLTAAEMDRDD 1148

Query: 883  IEALFAPLPEKI 894
              AL  P+ E++
Sbjct: 1149 WLALLQPITEQL 1160