Pairwise Alignments

Query, 896 a.a., COG0553: Superfamily II DNA/RNA helicases, SNF2 family from Pseudomonas fluorescens FW300-N1B4

Subject, 1027 a.a., Snf2 family helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  262 bits (670), Expect = 7e-74
 Identities = 151/392 (38%), Positives = 229/392 (58%), Gaps = 15/392 (3%)

Query: 479  MVVMPTSLIPNWLDEAAHFTPQLKVLALYGASRKKHFGD----LADYDLILTTYALLPKD 534
            ++V+PTSL+ NW  EA  FT     +A Y ++     G        + LI TTY ++  +
Sbjct: 622  LIVVPTSLLHNWRREAKRFTTL--AIAEYNSNTAFPKGHPEKFFNHFHLIFTTYGMMRNN 679

Query: 535  VERLAAQPLHVLVLDEAQYIKNPNSKAAHAARELNARQRLCLSGTPLENHLGELWSLFHF 594
            ++ L +     +VLDE+Q IKN +S    +  +L  + R+ L+GTP+EN L +LW+ F F
Sbjct: 680  IDILRSYTFEYIVLDESQNIKNNDSLTFRSVIQLQGKHRIALTGTPIENSLKDLWAQFRF 739

Query: 595  LLPGWLGDVKSFNRDYRVPIEKRASDVRLQ-HLNGRIKPFLLRRTKEQVATELPPKTEII 653
            L P  LG+  +F++ + +PI  R  +VR++  L   I PF+LRR+K +VA ELPP TE  
Sbjct: 740  LQPDLLGEESTFHKQFIIPI--RQGNVRMEKRLQQIIAPFILRRSKSEVAPELPPLTEET 797

Query: 654  HWVELNEAQRDVYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNDA 713
             +  ++E Q + YE  + ++   +  +   K        IL  +L+LRQ+ C  +L+   
Sbjct: 798  IYCAMSEKQGESYEQEKNSLRNILLQQPENKD-RYHMFSILNGILRLRQLACHPQLI--- 853

Query: 714  ALPSRGSTSGKLDSLMEMLEELFEEGRRILLFSQFTSMLSLIEDELKKRGVAYVILTGQT 773
              P     SGK + +++  + L  EG ++L+FS F   L ++ +  ++RG  Y +LTG T
Sbjct: 854  -FPDFDGVSGKTEQIIDTFDTLRSEGHKVLIFSSFVRHLEILAEVFRQRGWKYALLTGST 912

Query: 774  RDRRTPVKEFQSGKR-QIFLISLKAGGVGLNLTEADTVIHYDPWWNPATENQATDRAYRI 832
             +R + +  F   K  Q FLISLKAGGVGLNLT+AD V   DPWWNPA E+QA  RA+RI
Sbjct: 913  NNRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQADYVFIIDPWWNPAAESQAIARAHRI 972

Query: 833  GQEKPVFVYKMIARGTVEEKIQHLQKEKSDLA 864
            GQ+K V  Y+ I + ++EEKI  LQ++K  LA
Sbjct: 973  GQDKQVIAYRFITQNSIEEKILQLQEDKRRLA 1004



 Score = 72.0 bits (175), Expect = 2e-16
 Identities = 56/180 (31%), Positives = 79/180 (43%), Gaps = 37/180 (20%)

Query: 283 ERDWFDLELGIIVNGERLSLLPILLNLMRSHTELLNPERLARRRDDELILVNIPQRRSTD 342
           E DWF+L + +++   R+       +++    E L P       D  +IL  +P+   + 
Sbjct: 382 EPDWFELHITVVIGNLRIPFSRFRKHILEEKREFLLP-------DGRMIL--LPEEWFSK 432

Query: 343 QGPLQVALPFGRLKPVLATLGEFYLQEPGETTLRLSKADATRLNPLEGLPLLWEGGEQIR 402
            G L                    L    ET +RL       +        L E G +  
Sbjct: 433 YGNL------------------LELGTQTETGIRLKPTFVGAVQSA-----LEENGPKNL 469

Query: 403 TFAQRLRDIKDHTAVAPEGLNATLRPYQLEGLSWMRSLRQLEVGGILADDMGLGKTLQTL 462
            F + +R++       P+GLNA LRPYQ +G SWM  L +   GG LADDMGLGKTLQTL
Sbjct: 470 LFKREIRNVP-----VPQGLNAKLRPYQQKGFSWMVQLNKQGFGGCLADDMGLGKTLQTL 524