Pairwise Alignments

Query, 875 a.a., DNA topoisomerase I (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N1B4

Subject, 861 a.a., DNA topoisomerase III from Dechlorosoma suillum PS

 Score =  166 bits (419), Expect = 7e-45
 Identities = 185/679 (27%), Positives = 290/679 (42%), Gaps = 99/679 (14%)

Query: 1   MGKSLVIVESPAKAKTINKYLG-----------NQYVVKSSIGHIRDLPTSGSASASKEP 49
           MGK L+I E P+ A  I K LG           + +V+ S+IGH+ +L         +E 
Sbjct: 1   MGKQLIIAEKPSVAADIAKALGGFTKHDDYFESDNFVLSSAIGHLLELVIP------EEY 54

Query: 50  AAKRGKAAAGEGPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKD 109
             KRGK +    PV+ P  + +          P    +++ ++L    K+I+      KD
Sbjct: 55  EVKRGKWSFAHLPVIPPHFELK----------PVEKTESRLKLLT---KLIKR-----KD 96

Query: 110 ADTIYLATDLDREGEAIAWHL-REAIGGDDSRYKRVVFNEITKKAIQEAFSK--PGELDI 166
            D +  A D  REGE I  ++ R A  G     +R+    +T +AI++ F++   GE   
Sbjct: 97  VDGLVNACDAGREGELIFNYIARHAKSG--KAVQRLWLQSMTPQAIRDGFARLRRGEEMQ 154

Query: 167 DRVNAQQARRFLDRVVGYMVSPLLWAKVARG-----LSAGRVQSVAVKLVVEREREIRAF 221
              +A   R   D +VG   +  + A  ++       + GRVQ+  + LVVERER+IR F
Sbjct: 155 GLGDAAVCRSESDWLVGINGTRAMTAFNSKTGGFHLTTVGRVQTPTLSLVVERERKIREF 214

Query: 222 NPEEYWEVHADLGTAKGATVR--FDVA------REKGEAFKPLNEAQAMAALEKLKASSY 273
               YWEV A    A G      FD A       E   A +  +EA+A A   K +    
Sbjct: 215 KARPYWEVEATFAAAAGEYKGKWFDEAFKGKDEDEHARADRLWDEARAKALQAKCEGQPG 274

Query: 274 SIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYI-TYMRTDST 332
             V  E KP++      F  ++LQ+ A++R GF  K T+ +AQ LYE   + TY RTDS 
Sbjct: 275 E-VSEEAKPSTQLSPLLFDLTSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSR 333

Query: 333 NLSADAVAMARTYIE-------------------GEFGKKYLPEN---PNVYSSKEGAQE 370
            L  D +   +  ++                   G F  K L      PN          
Sbjct: 334 ALPEDYLGTVQATLQMFNGENLTKGSDTSVVDRYGIFANKILKSKWVVPNKRIFNNAKIS 393

Query: 371 AHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTVTVGAGDFELR 430
            H AI P+     P  LS  E   ++LY+L+ ++FLA     A+YL TT          +
Sbjct: 394 DHFAIIPT--TQAPKNLSEPE---QKLYDLVVKRFLAVFFPAAEYLITTRITRVAGEPFK 448

Query: 431 AKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDAMKLIKLDPTQHFTKPPARYSEASLV 490
            +G++L   G+  +  +  + GD+  L  ++QG+ ++  ++   Q+ T+PPARYSEA+L+
Sbjct: 449 TEGKVLVNPGWLAIYGREGQEGDEGNLVAVSQGEKVQTEEVAVNQNETRPPARYSEATLL 508

Query: 491 KEME----------------KRGIGRPSTYAAIISTIQDRGYVALHNRRFY-SEKMGDIV 533
             ME                 RG+G P+T A II  +    Y+    R    + K   ++
Sbjct: 509 SAMEGAGKMVDDEELRAAMAGRGLGTPATRAQIIEGLITEQYLHREGRELIPTAKAFSLM 568

Query: 534 TERLAESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPEGGMR 593
           T       S L     T   E  L  + +G+      + E     +  ++ A+S +    
Sbjct: 569 TLLNGLGISELTSPELTGEWEWKLAQIERGDLSRSAFMQEIEEMTRHIVDRAKSYDSDTV 628

Query: 594 ANQPVMTDIPCLLCGRPMQ 612
                +   PC  CG  M+
Sbjct: 629 PGDFGLLKSPCPKCGGLMR 647