Pairwise Alignments

Query, 856 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N1B4

Subject, 852 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  691 bits (1783), Expect = 0.0
 Identities = 380/842 (45%), Positives = 510/842 (60%), Gaps = 11/842 (1%)

Query: 11  PARHTPITRNLIFVIGLLFVVGVLIALIALFSIAGRLDAQDLSKTTFYTQRALENRITAS 70
           P   T   R ++  +  L V  ++ A +AL +IA  +D   L+++ F   +AL+ +    
Sbjct: 13  PKARTLFARRILPSMVALLVAALVAAALALINIARHIDRDALAQSQFLASKALQAQHDWM 72

Query: 71  KNYIVSYANWTTAYDHLNDKVDVQWAYVEQNVGKTLFTIDHYDAVFVI--DGQRTKYATV 128
              IV YA W  AY HLN + D  WAY + N+G +L+    Y+AV VI  DG+ T Y+ V
Sbjct: 73  NRSIVDYAFWGDAYRHLNGQPDTDWAYTQANLGPSLYKDFDYEAVLVINPDGE-TAYSVV 131

Query: 129 RGLLVQDQATAYLSTSMATLVDEVQSQESLIEPVSRYTLFEGKPALLTAAAIVPNDERPA 188
           RG L    +  YL   +  L+   ++       VS     EG+PAL+ AA +        
Sbjct: 132 RGKLQPVDSREYLQGGLPELLARARTAVEEDAGVSSLLWSEGQPALVAAAVLSTGGANVE 191

Query: 189 VDPKSTSVLIYVDQLNPEKLATLSADYGLHDLSLTADDVIVPGQPAVALT---GTGYSLV 245
                +S+L++VD L+  +L  + A Y +  L L      + G P++A T   G+     
Sbjct: 192 EIDGPSSILLFVDLLDAARLEEIGAQYAIEHLRLAGGLAPLDG-PSIAQTMENGSAIHFT 250

Query: 246 SRLEQPGHQLLWSLLPPLGGALLILALLTAYFFRYVLRTSGHVDASYTSLDLSNQALEAS 305
               QPG  LLW  LP L    L L LL     R+ LR+   +D SY  L  S  AL  S
Sbjct: 251 WTAPQPGRLLLWVTLPILAAVALGLGLLAWLLMRHALRSMHLLDVSYARLAASRSALAES 310

Query: 306 EERFRAVAEAASDWIWETDDQHCITYLSGRFSTVTGFSDQQWLGQNIGQLLNCETMPLSL 365
           EERFR VAEAASDWIWETDDQ  +T+LS RF  +TG   ++WLG+ + +LL  ++  L  
Sbjct: 311 EERFRDVAEAASDWIWETDDQARLTFLSNRFRQITGHEPREWLGRPLLELLISDSAALHS 370

Query: 366 WLNKLDEEQAVSHLRCSYRDQSGQQRVCRVSARPIQRKGALLGFRGTASDITDEVAAHAQ 425
           WL    E   ++ LR SYR   G +R CR++AR IQ  G L+G+RGTASD+T+E  A A+
Sbjct: 371 WL----EAPEITPLRSSYRAADGCERFCRLAARSIQHDGKLVGYRGTASDVTEETKAQAR 426

Query: 426 IQHLSMHDALTGLPNRNKLARYLEDALALKEQSTALTLLMIDLDNFKPINDSLGHPAGDA 485
           +Q+LS HD LTGLPNR++L  YLE  LA     + +TLL IDLD FKP+ND+LGH AGD 
Sbjct: 427 VQYLSQHDPLTGLPNRSRLRDYLEQNLASLRSGSTMTLLYIDLDRFKPVNDTLGHAAGDE 486

Query: 486 VLLEVAIRLRECTRDIDLVARLGGDEFVLVLHGMDSHAEIDRFCERLLDSLHQPIHYDHH 545
           VL+ VA RLRE TRD DLVARLGGDEFV+ LH M    +IDR C R++++L  P  Y++H
Sbjct: 487 VLMGVASRLRERTRDGDLVARLGGDEFVVALHRMSEDEDIDRLCNRIIEALSSPFAYENH 546

Query: 546 TLHIGASIGIALSRRQGHLPEELIRCADIALYQAKSNGKKTWCYFAAHMNDQIQHRRQLE 605
            + IGASIG+AL+        EL+RCADIALYQAK  G+ TW  +   M+ ++  R + E
Sbjct: 547 QISIGASIGVALAPMDATQANELLRCADIALYQAKDAGRGTWRAYGRDMDQRLHERLRRE 606

Query: 606 SDLRQAIKNNEFVMHYQPRYHVDGKQIVSVEALLRWQHPVQGLLNPDAFIPLAEQTDLIV 665
             LR AI      +HYQPRY   G +I+  EAL+RW HP  GLL P+ FIPLAE+T LI+
Sbjct: 607 EQLRVAIAEQHLEVHYQPRYLSQGMRIIGAEALVRWHHPTHGLLLPEQFIPLAEETGLII 666

Query: 666 PLGRWVLREACETALTWPGAMMVSVNLSPVQFARSDVIEDVREALIQSRLPASRLELEIT 725
           PLGRWVL++AC+ A TWP  M+VSVNLSP+Q     +++++ +AL ++ L   RLELEIT
Sbjct: 667 PLGRWVLQQACQQAATWPVDMVVSVNLSPLQLHDDRLLDEISQALHENGLAGERLELEIT 726

Query: 726 ENVMLIDVDGALATMNALKELGVRLNMDDFGTGYSSLGYLRTYPFDGIKIDKRFIASMSN 785
           E+ +L +    L  +  +K LGV L +DDFGTGYSSL  LR YPFD IKID  F+A +  
Sbjct: 727 ESALLQETQSTLDLLKRIKALGVHLAVDDFGTGYSSLTSLRHYPFDVIKIDNSFVAGIEQ 786

Query: 786 GSNDRAVVQAIINLGKAMGLTVTAEGVETLEQLDFLISDQCHEVQGFYLSRPVDRHALLP 845
              D ++V+A+I LG+ + + VTAEGVET EQL  L  D C EVQGF++S P+    L  
Sbjct: 787 SMEDHSIVRALIELGRGLQMRVTAEGVETEEQLRLLTDDGCTEVQGFHMSLPMPAEELRR 846

Query: 846 LL 847
           LL
Sbjct: 847 LL 848