Pairwise Alignments

Query, 856 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N1B4

Subject, 807 a.a., PAS family GGDEF/EAL protein from Caulobacter crescentus NA1000

 Score =  389 bits (1000), Expect = e-112
 Identities = 223/535 (41%), Positives = 309/535 (57%), Gaps = 10/535 (1%)

Query: 314 EAASDWIWETDDQHCITYLSGRFSTVTGFSDQQWLGQNIGQLLNCETMPLS--LWLNKLD 371
           E ASDW+WE D    +TY+S R +   G      LGQ +  L      P      L+ L 
Sbjct: 237 EGASDWLWEVDAAGRLTYVSDRMAAAAGVDKDALLGQPMSDLCGAAEAPGGPVAALSALF 296

Query: 372 EEQAVSH---LRCSYRDQSGQQRV--CRVSARPIQR-KGALLGFRGTASDITDEVAAHAQ 425
            EQ       +  +  D +G+       +SA+P+    G  +GFRG  +DIT       +
Sbjct: 297 AEQKTFRDVVVSITVADDAGRPATHWWALSAKPVHDLDGLFVGFRGVGADITQAREDQER 356

Query: 426 IQHLSMHDALTGLPNRNKLARYLEDALAL--KEQSTALTLLMIDLDNFKPINDSLGHPAG 483
           I HL+ +D LT LPNR  L + L  A     +++++   +L +DLD+FK +NDSLGHP G
Sbjct: 357 ISHLAHYDVLTQLPNRLSLLQNLGKAWMDHGRDKTSGCAVLCLDLDHFKGVNDSLGHPVG 416

Query: 484 DAVLLEVAIRLRECTRDIDLVARLGGDEFVLVLHGMDSHAEIDRFCERLLDSLHQPIHYD 543
           DA+L++VA RLR C  +  +VARLGGDEF +V      H  +    + ++++L  P    
Sbjct: 417 DALLMQVASRLRSCVGETGMVARLGGDEFAVVCAPSPGHEALSALSQSIVETLSAPYDIL 476

Query: 544 HHTLHIGASIGIALSRRQGHLPEELIRCADIALYQAKSNGKKTWCYFAAHMNDQIQHRRQ 603
            H + IGAS+GIA++      P+ L++ AD+ALY+AK +G+  + +F   M+   Q RR 
Sbjct: 477 GHNVLIGASVGIAVAPFDADDPDGLLKNADLALYRAKGDGRGAYRFFETAMDVWAQERRA 536

Query: 604 LESDLRQAIKNNEFVMHYQPRYHVDGKQIVSVEALLRWQHPVQGLLNPDAFIPLAEQTDL 663
           LE DLR+A+  +E  + +QP       +    EALLRWQHP +GL+ P  FI  AEQ  L
Sbjct: 537 LEMDLREALARDELKLFFQPLIGRRDNETTGFEALLRWQHPTRGLVPPSDFIECAEQWGL 596

Query: 664 IVPLGRWVLREACETALTWPGAMMVSVNLSPVQFARSDVIEDVREALIQSRLPASRLELE 723
           I  +G WVL EAC TA TWP  + V+VNLSP QFA  D+++ VR AL  S L  +RLELE
Sbjct: 597 IGRIGEWVLNEACRTAATWPSHLTVAVNLSPNQFASGDLVDQVRAALKASGLAPARLELE 656

Query: 724 ITENVMLIDVDGALATMNALKELGVRLNMDDFGTGYSSLGYLRTYPFDGIKIDKRFIASM 783
           ITE ++L D    L  + ALK LGV++ MDDFGTGYSSL YL  +PFD IKID+ F+A M
Sbjct: 657 ITEGLLLHDSAKTLEQLAALKALGVKIAMDDFGTGYSSLAYLWRFPFDKIKIDRSFVAEM 716

Query: 784 SNGSNDRAVVQAIINLGKAMGLTVTAEGVETLEQLDFLISDQCHEVQGFYLSRPV 838
            +      +++ I  LG+ + L VTAEGVET  Q   L   +C + QGF   RP+
Sbjct: 717 QDNVAIADILRTIALLGQTLNLEVTAEGVETQAQARLLAEMRCDQFQGFLFGRPM 771