Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N1B4

Subject, 669 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella loihica PV-4

 Score =  634 bits (1636), Expect = 0.0
 Identities = 344/615 (55%), Positives = 422/615 (68%), Gaps = 27/615 (4%)

Query: 1   MTAAKNRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAAHPELITSDSPTQ 60
           M A ++ I +L  EL+QHNYRY+V D PSIPDAEYDRL   L+ LEA HPEL  +DSPTQ
Sbjct: 1   MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQ 60

Query: 61  RVGSAALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGL-DLPVGDLFGAGAAVEYS 119
           RVG  ALS F QV H  PMLSL N F E +   F +RV + L D P            + 
Sbjct: 61  RVGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRVGDKLPDTPA-----------FC 109

Query: 120 CEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVR 179
           CEPKLDGLAVS+LY+DGV  R ATRGDGT GEDI+ NVRT++++PL+L G+G+P  LEVR
Sbjct: 110 CEPKLDGLAVSILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVR 169

Query: 180 GEVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQIS 239
           GEVFM KA FE +N      G K F NPRNAAAGSLRQLDSKITA+R L F  Y +G + 
Sbjct: 170 GEVFMPKAAFEAVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVE 229

Query: 240 AD---IADTHIGNLQQLKAWGMPISHELKLANGIAECLDYYRDIGERRNALPYEIDGVVF 296
            +   +A +H   L QLK WG P+S E+K+   I   L YY+DI  RR+ L YEIDGVV 
Sbjct: 230 PETWPLAASHFEQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVL 289

Query: 297 KVNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356
           KVN IA Q+ LGF A+ PRWA A+KFPA EE+T+L  V+FQVGRTGAVTPVARL+PV V 
Sbjct: 290 KVNDIAQQQTLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVG 349

Query: 357 GVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVAERRPEHARPVQIPEQCP 416
           GVTV+NATLHN DE+ARLG+MIGD+VIIRRAGDVIPQVV VV E+RP  A+ +Q P QCP
Sbjct: 350 GVTVSNATLHNADEIARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCP 409

Query: 417 VCGSHVERTQLVKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEK 476
           VCGS VER            +   AV RC G L C AQ K+AI HF SR+A+DI+G+G+K
Sbjct: 410 VCGSDVER------------VEGEAVARCTGGLVCEAQRKEAIKHFASRKALDIDGMGDK 457

Query: 477 SVEQLVDEGLVSSPADLYALTFEQIVDLEGFAELSSKNLLGAIEDSKQPSLARFIYALGI 536
            VEQL+D+ LV+SPADL+ LT   I  L+     S+ NL+ A+E +KQ + ARF+Y+LGI
Sbjct: 458 VVEQLIDKELVASPADLFKLTASAITMLDRMGMKSATNLVNALEAAKQTTFARFLYSLGI 517

Query: 537 PDVGEETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNRQVIVDLL 596
            +VGE TA  LA    +LE ++QA  +    + DVG+ VA  +  FFE  HN +VI  LL
Sbjct: 518 REVGEATAANLANYFKTLEHLKQADAETFMKVDDVGVIVAQHLVHFFEQPHNLEVIDGLL 577

Query: 597 KHGMQIQDQGELGAE 611
           + G+   D  E+  E
Sbjct: 578 QAGVHWPDIEEVAEE 592



 Score =  111 bits (277), Expect = 1e-28
 Identities = 73/171 (42%), Positives = 96/171 (56%), Gaps = 7/171 (4%)

Query: 611 EFSASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEAVMSADWLDMRQA--LPEKQATSV 668
           E +  TT   FL  L I  VG   A  LA+ F +LE +  AD     +   +    A  +
Sbjct: 501 EAAKQTTFARFLYSLGIREVGEATAANLANYFKTLEHLKQADAETFMKVDDVGVIVAQHL 560

Query: 669 REFFAGTENRQLAEAAEKQLRDFGMHWQSEKKVVE-GLPLAGQTWVLTGSLELMSRDIAK 727
             FF    N ++ +     L   G+HW   ++V E  L L GQTWVLTG+L  ++R+ AK
Sbjct: 561 VHFFEQPHNLEVIDG----LLQAGVHWPDIEEVAEEALSLKGQTWVLTGTLTQLNRNDAK 616

Query: 728 DKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVEFL 778
            KL++LGAKVAGSVS  T C+VAG  AGSKL KA ELG+KV+DE   +  L
Sbjct: 617 AKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEAELLAIL 667