Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N1B4

Subject, 808 a.a., DNA ligase, NAD-dependent (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  463 bits (1191), Expect = e-134
 Identities = 262/609 (43%), Positives = 368/609 (60%), Gaps = 41/609 (6%)

Query: 11  LRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAAHPELITSDSPTQRVGSAALSAF 70
           LR +L+ H++RY+VLD+  I DAEYD LF EL+ +EA  P L T DSPT RVG   ++A 
Sbjct: 40  LRDQLNYHSHRYYVLDDAEISDAEYDALFRELQDIEAEWPSLRTPDSPTHRVGDTVVAAL 99

Query: 71  TQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPVGDLFGAGAAVEYSCEPKLDGLAVS 130
               H + M SL NAF   +   F +R+               A   + C+PK+DGLA+ 
Sbjct: 100 ETQAHTLRMYSLDNAFSAEEWDGFIQRMLRA---------EPDAPTAFWCDPKMDGLALE 150

Query: 131 LLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTG-WPATLEVRGEVFMSKAGF 189
           ++Y++GV     TRGDG  GE ++  +RTVRN+PL+LHG G  PA LEVRGEV +++A F
Sbjct: 151 VIYENGVFTTALTRGDGEKGEIVTTAMRTVRNLPLRLHGEGPHPARLEVRGEVVITRAEF 210

Query: 190 ERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQI--SADIAD--- 244
           + LNA +   G K FANPRNAAAGS+RQLD+ +TA RPL F  YG+GQ+   A+ +D   
Sbjct: 211 DALNAARRGAGEKLFANPRNAAAGSVRQLDASVTAGRPLRFLAYGVGQVVWPAETSDGAA 270

Query: 245 -----------THIGNLQQLKAWGMPISHELKLANGIAECLDYYRDIGERRNALPYEIDG 293
                      TH   +  L  +G     + +     A+ + YY D+G RR+ LP++IDG
Sbjct: 271 SAAQGPEARWATHGQVMAALADYGFGTPPDARRCETPAQVMAYYEDLGRRRSELPFDIDG 330

Query: 294 VVFKVNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPV 353
           VV K++ +++Q  LG+ AR PRWAIA KFPA +  T L  +  QVGRTG +TPVA L PV
Sbjct: 331 VVAKLDDLSAQAALGYTARAPRWAIALKFPAHQATTRLEHIAIQVGRTGVLTPVAELAPV 390

Query: 354 KVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVAERRPEHARP-VQIP 412
            V GVTV+ ATLHN DE+    L +GD V+++RAGDVIP+VV+ + ++RP    P  + P
Sbjct: 391 AVGGVTVSRATLHNEDEIRAKDLRVGDMVVVQRAGDVIPEVVRPLVDQRPASGLPEFEFP 450

Query: 413 EQCPVCGSHVERTQLVKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEG 472
            +CPVC +       V+R  G       A +RCV  + C A ++Q+IIHFVS+  +DI+G
Sbjct: 451 AECPVCHTP------VRREPGE------AAWRCV-NVGCPAVVRQSIIHFVSKAGLDIQG 497

Query: 473 LGEKSVEQLVDEGLVSSPADLYALTFEQIVDLEGFAELSSKNLLGAIEDSKQ-PSLARFI 531
           +G + VE LVD G V+SPADL+ L  + ++  E      ++N + A + ++   +L R I
Sbjct: 498 VGRRWVELLVDRGKVTSPADLFGLDKQTLLAFERMGPKLAENFIAAFDTARTGATLNRLI 557

Query: 532 YALGIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNRQV 591
            ALGI  VGE+TA+ LA     L+ +  A  + L  LPD+G EVA  I +FF +  NR +
Sbjct: 558 CALGIRHVGEQTARTLAAHFADLDALGAAQAETLQQLPDIGPEVAASIRAFFANEGNRAL 617

Query: 592 IVDLLKHGM 600
           +  L   G+
Sbjct: 618 LERLRGVGL 626



 Score = 81.6 bits (200), Expect = 2e-19
 Identities = 66/182 (36%), Positives = 95/182 (52%), Gaps = 19/182 (10%)

Query: 617 TLGGFLDKLHIPSVGPGGAQKLADKFGSLEAVMSADWLDMRQALPE---KQATSVREFFA 673
           TL   +  L I  VG   A+ LA  F  L+A+ +A   +  Q LP+   + A S+R FFA
Sbjct: 552 TLNRLICALGIRHVGEQTARTLAAHFADLDALGAAQ-AETLQQLPDIGPEVAASIRAFFA 610

Query: 674 GTENRQLAEAAEKQLRDFGMHW-------QSEKKVVEGL---PLAGQTWVLTGSLELMSR 723
              NR L E    +LR  G+ W       +++     G    PLAG   + TGSL  ++R
Sbjct: 611 NEGNRALLE----RLRGVGL-WPVRPVRPEADAAGAPGEGSGPLAGLRVLFTGSLTTLTR 665

Query: 724 DIAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVEFLKKHGI 783
             A+ +  + GA + GSVS K   +V G   GSKL KA +LG++VL E+ F++ L+  G 
Sbjct: 666 SDAERRAVAAGANILGSVSKKLDLLVVGDKPGSKLDKATKLGIRVLREQEFLDLLEGRGG 725

Query: 784 DV 785
           DV
Sbjct: 726 DV 727