Pairwise Alignments

Query, 1162 a.a., Chromosome partition protein smc from Pseudomonas fluorescens FW300-N1B4

Subject, 1141 a.a., chromosome segregation protein SMC (RefSeq) from Shewanella loihica PV-4

 Score =  754 bits (1946), Expect = 0.0
 Identities = 483/1196 (40%), Positives = 698/1196 (58%), Gaps = 90/1196 (7%)

Query: 1    VRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60
            +RL  IKLAGFKSFVD T + F   + A++GPNGCGKSN+IDAVRWV+GESSAK+LRG+S
Sbjct: 1    MRLTQIKLAGFKSFVDVTKIPFNQPLTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61   MTDVIFNGSTSRKPVSQASIELVFDNSDGTLLGEWAAYAEISIRRKVTRDSQTTYYLNGA 120
            M DVIFNGS++R+PVS AS+EL FDN  G L G++A+Y  I+++R+V+RD +++Y+LNG 
Sbjct: 61   MADVIFNGSSARRPVSVASVELSFDNQQGRLGGQYASYQAIAVKRQVSRDGESSYFLNGQ 120

Query: 121  KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIESKPEDLRNFIEEAAGISKYKERRRET 180
            KCRR+DITD+F+GTGLGPRSY+IIEQG IS+LIESKP++LR FIEEAAGIS+YKERRRET
Sbjct: 121  KCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAGISRYKERRRET 180

Query: 181  ENRIRRTHENLARLTDLREELERQLERLHRQAEAAKKYQEYKGEERQLKAQLSALRWQAL 240
            ENRIR T ENL RL D+R+EL RQ+++L  QAEAA++Y+  K  ER   AQL   ++  L
Sbjct: 181  ENRIRHTRENLERLGDIRQELGRQIDKLAEQAEAARQYRALKQTERDQHAQLEVAKYLEL 240

Query: 241  NEQVGQRESIIGTQEITFEALVAEQRNADAAIERLRDGHHDLSERFNLVQGR-------F 293
            + Q  +      +QEI  EA    Q   DA  E L     ++  + + ++ +       F
Sbjct: 241  SAQSDKL-----SQEI--EAKTLTQSEGDAGREALSRNLTEIKLKLDELERQEQQQVEAF 293

Query: 294  YSVGGDIARVEQSIQHGQQRLRQLQDDLKEAERARLETESHLGHDRTLLLTLGEELDMLT 353
            Y  G  IA++EQ ++H QQ+   L+  +K+ E      ++    ++ L+L  G+    L 
Sbjct: 294  YLNGNQIAKLEQEVKHRQQQDAHLKQRIKQDEEKLALLKAQ---EQALILARGD----LD 346

Query: 354  PEQEVTSAAAEEAAAALEESETTMHGWQEQWDTFNLTAAEPRRQAEVQQSRIQQLETSLE 413
              Q      A EA  AL+     +    EQ     L+  + +      +  + Q +  LE
Sbjct: 347  ERQH----GAREAHQALQLQLELL---DEQLGEVELSLEQAQEAESQAKQAVNQCQLRLE 399

Query: 414  RLADRQKRLGEERALLSADPEDAA--IMELSEQLAASEATLEDLQASEEAQVERLEQLRQ 471
                  K      A + +  + A+  + +LS Q       L+  Q   E   ERL++L+ 
Sbjct: 400  LTKGELKHKQSALAQVKSQHQSASRQLEQLSHQDETDNLALQHAQC--ERLAERLDELKG 457

Query: 472  ELQQALSAQQQAQGDLQRLNGRLASLEALQQAALDPGTGTA---EWLREQHLADRPRLAE 528
            E++   + Q Q Q   ++     A +EAL Q+  +     A     L ++       L +
Sbjct: 458  EIELGAATQSQRQEQARQTQ---AQVEALSQSLAEERGRLAVVKRILPQEDALQGRALWQ 514

Query: 529  GLKVEAGWELAVETVLGADLQAVLVDDFGDFDLAGFAQGDLRLLSPATDGVRMPGSLLDK 588
             ++V  GWE AV+ +L   L   + D     +    +  +L      T            
Sbjct: 515  AIQVTPGWEAAVDLLLDGLLTQKVSDKHSGMETENESGFELSRSQKWTG----------- 563

Query: 589  VEAQIDLSPWLGQVKPVDSLEQALALRGQLAAGQSLISRDGYWVGRHFLRVRRASEAESG 648
            + ++++L+PWL ++   DSL QA A+ G +   + +++ DGY VG  F+      +AE  
Sbjct: 564  LSSEVNLAPWLSRLNWADSLSQAKAMLGSIEDDERIVTADGYIVGNGFV----LQKAE-- 617

Query: 649  VLARGQEIQRLGLEREERE----ATVETLETRLQNLRAQQRQQENGREHLRRL---LQDE 701
               +G+++ +L  E++  E    A+VE ++ R   L    +  +  RE L +L   LQ  
Sbjct: 618  ---QGRQLVQLKAEQQALELSIAASVEAIDERRAVLAEVNQALDEQREALTQLNTSLQGT 674

Query: 702  ARQQGELKAQLSAGKAKVEQLTLRRTRLDEELTE-LSEQRALEHE--NIGEARLQLQEAL 758
              ++  L AQ  A + ++ Q   ++ RL   L E + E  A+E     +   R Q +  L
Sbjct: 675  QLERERLMAQAQATQERIAQQGEQQARLKALLEEQIGELEAVEQSLSELTSRRDQDEAQL 734

Query: 759  DSMALDTEQRELLLAQRDSLRERLDRVRQEARQHKDHAHQLAVRLGSLKAQHDSTRQALE 818
              +    + +   LA R +  + L R RQ        + QL   L ++  +   +RQ  E
Sbjct: 735  TELTRSADSQVAGLADRRAQHKALGRERQALALQ---SQQLQQSLQAINTEQALSRQQGE 791

Query: 819  RLEMQSERLTEKREQLSLNLE-----EGEAPLEELRLKLEELLDKRMTVDEELKTAQMAM 873
            +LE Q + L ++  +L   LE     +G+   + +  +L + L ++  V   L   ++  
Sbjct: 792  QLERQMKELAQELSELQGQLEGQDKLDGKLQADAMAAQLNDALARQGEVQAALDALRLQQ 851

Query: 874  EDADRELRDAEKRRTQAEQQSQLIRSQLEQQRMEWQALTVRRKTLQDQL-------LEDG 926
             +   +  +       A+Q+ QL   +LE       AL +RR+ ++ Q+           
Sbjct: 852  AELQNQADEIG-----AKQKQQL--GKLEHLTQAISALKLRREGIKGQIDSQLAQIRSQE 904

Query: 927  YDLNGVLATLLAGANEKDAEEELERIAARIQRLGAINLAAIDEYQQQSERKRYLDAQNDD 986
             D+  V ATL    +    ++ LER  A+I+ LGAINLAAI+E++QQS+RK YLD+Q+ D
Sbjct: 905  VDIAEVQATLDLTVSLSHRQKTLERTKAQIEHLGAINLAAIEEFEQQSQRKAYLDSQDAD 964

Query: 987  LVEALDTLENVIRKIDKETRNRFKDTFDQINGGLQALFPKVFGGGRAYLELTGEDLLDTG 1046
            L +AL +LE  IRKID+ET+ RFK+TFD++N  L  LFPKVFGGG AYL LT +DLL+TG
Sbjct: 965  LAKALGSLEEAIRKIDRETKTRFKETFDKVNQDLGVLFPKVFGGGSAYLALTDDDLLETG 1024

Query: 1047 VTIMAQPPGKKNSTIHLLSGGEKALTALALVFAIFKLNPAPFCMLDEVDAPLDDANVGRY 1106
            VTIMA+PPGKKNSTIHLLSGGEKALTAL+LVFAIF+LNPAPFCMLDEVDAPLDDANV R+
Sbjct: 1025 VTIMARPPGKKNSTIHLLSGGEKALTALSLVFAIFRLNPAPFCMLDEVDAPLDDANVDRF 1084

Query: 1107 ARLVKEMSQTVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVDVEEAMAMVDA 1162
             RLVKEMSQ+VQF+YI+HNKI ME+ADQL+GVTMHEPG SR+VAVD++EA+A+ DA
Sbjct: 1085 CRLVKEMSQSVQFVYISHNKITMELADQLIGVTMHEPGVSRIVAVDIDEAVALADA 1140