Pairwise Alignments

Query, 1162 a.a., Chromosome partition protein smc from Pseudomonas fluorescens FW300-N1B4

Subject, 1145 a.a., SMC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  798 bits (2061), Expect = 0.0
 Identities = 505/1191 (42%), Positives = 712/1191 (59%), Gaps = 75/1191 (6%)

Query: 1    VRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60
            +RLK IKLAGFKSFVDPT + F   ++A++GPNGCGKSN+IDAVRWV+GESSAK+LRG+S
Sbjct: 1    MRLKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61   MTDVIFNGSTSRKPVSQASIELVFDNSDGTLLGEWAAYAEISIRRKVTRDSQTTYYLNGA 120
            M+DVIFNGS++RKPVS A +ELVF+N +G L G++A+Y EIS++R+V+RD ++ Y+LNG 
Sbjct: 61   MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYEEISVKRQVSRDGESWYFLNGQ 120

Query: 121  KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIESKPEDLRNFIEEAAGISKYKERRRET 180
            KCRR+DITD+F+GTGLGPRSY+IIEQG IS+LIESKP+DLR FIEEAAGIS+YKERRRET
Sbjct: 121  KCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAGISRYKERRRET 180

Query: 181  ENRIRRTHENLARLTDLREELERQLERLHRQAEAAKKYQEYKGEERQLKAQLSALRWQAL 240
            E+RIR T ENL RL D+R EL +QL++L +QA+AA +Y+E K  ER+  A+L  +R+Q L
Sbjct: 181  ESRIRHTRENLERLGDIRSELGKQLDKLSQQAKAATQYRELKQAERKTHAELLVMRFQEL 240

Query: 241  NEQVGQRESIIGTQEITFEALVAEQRNADAAIERLRDGHHDLSERFNLVQGRFYSVGGDI 300
              Q+      I + E+   A  +  + ++     L+     L+E+       +Y  G +I
Sbjct: 241  QSQMASLSEQINSLELQQAAAQSLAQTSELESTELQVKLSQLAEQEQHAVEAYYLTGTEI 300

Query: 301  ARVEQSIQHGQQRLRQLQDDLKEAERARLETESHLGHDRTLLLTLGEELDMLTPEQEVTS 360
            A++EQ +Q  +QR  QL   L++      + ++ L   +     L  EL  L P+ E+  
Sbjct: 301  AKLEQQLQSQKQRDAQLHTQLEQLSEQLTQNKAKLDTYQASFHALEAELGQLAPQHELQQ 360

Query: 361  AAAEEAAAALEESETTMHGWQEQWDTFNLTAAEPRRQAEVQQSRI---QQLETSLERLAD 417
               +E  A  E S +      E   T     A+ + Q E+ +S++   QQL     +L  
Sbjct: 361  EMMDELQAQWEMSVSRSEAQTEVARTQASAVAQHKLQLELHRSKLVHQQQLNAHKTQLHQ 420

Query: 418  RQKRLGEERALLSADPEDAAIMELSEQLAASEATLEDLQASEEAQVERLEQ-------LR 470
             Q++                  ELS   + +E  LED  AS   ++E LEQ       + 
Sbjct: 421  EQQQ------------------ELS---SLTEHALEDTSASLSQEIELLEQVITQQIEVN 459

Query: 471  QELQQALSAQQQ----AQGDLQRLNGRLASLEALQQAALDPGTGTAEWL-REQHLADRPR 525
            QEL+ AL    Q    A+G+ ++L+ RL S+ A  +          +WL +++ L+D+P+
Sbjct: 460  QELELALVENTQALDLARGEFEQLSQRLTSMRARFEL-------VEQWLAKQEELSDKPQ 512

Query: 526  LAEGLKVEAGWELAVETVLGADLQAVLVDDFG-DFDLAGFAQGDLRLLSPATDGVRMPGS 584
            L + ++VE GWE A E      LQ ++    G   +  GF   D R L    D +   GS
Sbjct: 513  LWQSIQVENGWEAAAELA----LQGLMTLPVGVSANELGF-YTDARCLEKIDDHIE--GS 565

Query: 585  LLDKVEAQIDLSPWLGQVKPVDSLEQALALRGQLAAGQSLISRDGYWVGRHFLRVRRASE 644
             + K+ A ++L+PWL  +K  D+L  A A    LAA + +++ DGY +G+ FL  ++ + 
Sbjct: 566  PI-KLPADVNLAPWLNGLKWADNLASAQAQLASLAADERIVTADGYLLGKGFLIAKQDNS 624

Query: 645  AESGVLARGQ-EIQRLGLEREEREATVETLETRLQNLRAQQRQQEN-GREHLRRLLQDEA 702
                 L++ Q ++     E  +  A  ++    L     Q R   N G + L +L  D+A
Sbjct: 625  QSLVQLSKEQTQLSEAIAECVQARAIQQSKLDELSQQLIQVRDSVNQGTQRLHQLQLDKA 684

Query: 703  RQQGEL---KAQLSAGKAKVEQLTLRRTRLDEELTELSEQRALEHENIGEARLQLQEALD 759
             +  +L   +A     +AK  QL     R   EL EL+ Q  L    + E   +L +AL 
Sbjct: 685  TKSTQLNNAEALAKQREAKRGQLEDTVARTHAELAELAGQLML----LAEQEDELADAL- 739

Query: 760  SMALDTEQRELLLAQRDSLRERLDRVRQEARQHKDHAHQLAVRLGSLKAQHDSTRQALER 819
            + ++D +Q++   AQ D  R +  +      Q  D   +L+    SL++       + E+
Sbjct: 740  AQSIDKQQQQSQDAQGDLARHQALKA-----QISDTQRRLSTLNASLQSVTTRMAVSTEQ 794

Query: 820  LEMQSER---LTEKREQLSLNLE-----EGEAPLEELRLKLEELLDKRMTVDEELKTAQM 871
            +E+Q  R   L + RE LS  L       G+    +L  +L  LL+++ +  + LK  + 
Sbjct: 795  IELQRVRVNELVQSRETLSAQLASVAELHGDQQTAKLSEQLALLLNQQQSQQQALKALRT 854

Query: 872  AMEDADRELRDAEKRRTQAEQQSQLIRSQLEQQRMEWQALTVRRKTLQDQLLEDGYDLNG 931
                    L     ++ Q   + + +   L   ++  + L  +  +    L E    L  
Sbjct: 855  QQSSLTETLNSIGLKQKQELGKLEGLTQSLSTLKLRREGLKGQADSQLAALSEQQIVLAQ 914

Query: 932  VLATLLAGANEKDAEEELERIAARIQRLGAINLAAIDEYQQQSERKRYLDAQNDDLVEAL 991
            ++ +L +       + +L++I  +I RLGAINLAAI+E++QQSERK YLD Q++DL + L
Sbjct: 915  IIDSLPSDGQPDKWQRDLDQIRQKIIRLGAINLAAIEEFEQQSERKSYLDHQDEDLNKGL 974

Query: 992  DTLENVIRKIDKETRNRFKDTFDQINGGLQALFPKVFGGGRAYLELTGEDLLDTGVTIMA 1051
             TLE  IRKIDKETR RFK TFD +N  L  LFPKVFGGGRAYL LT +DLL+TGVTIMA
Sbjct: 975  ATLEEAIRKIDKETRTRFKATFDAVNEDLGRLFPKVFGGGRAYLALTEDDLLETGVTIMA 1034

Query: 1052 QPPGKKNSTIHLLSGGEKALTALALVFAIFKLNPAPFCMLDEVDAPLDDANVGRYARLVK 1111
            QPPGKKNSTIHLLSGGEKALTAL+LVFAIF+LNPAPFCMLDEVDAPLDDANV R+ RL+K
Sbjct: 1035 QPPGKKNSTIHLLSGGEKALTALSLVFAIFRLNPAPFCMLDEVDAPLDDANVERFCRLLK 1094

Query: 1112 EMSQTVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVDVEEAMAMVDA 1162
            EMSQ+VQFIYI+HNKI MEMADQL+GVTMHEPG SR+VAVD+E+A+AM DA
Sbjct: 1095 EMSQSVQFIYISHNKITMEMADQLIGVTMHEPGVSRIVAVDLEQAVAMADA 1145