Pairwise Alignments

Query, 211 a.a., Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N1B4

Subject, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  132 bits (331), Expect = 1e-35
 Identities = 83/232 (35%), Positives = 116/232 (50%), Gaps = 28/232 (12%)

Query: 6   IRIIHQDAAVLVVNKPTLLLSVPGRADDNKDCLITRLQ---------ENGYPEARIVHRL 56
           + I+++D  V+VVNKP  L+  PG  + +   L+  L          +   P   +VHR+
Sbjct: 107 LNIVYEDPYVMVVNKPAGLVVHPGHGNYH-GTLVNALAWHMKDIPEYDANDPHVGLVHRI 165

Query: 57  DWETSGIILLARDPDTHRELSRQFHDRETEKAYTALCWGQPELDSGSIDLPLRYDPPTKP 116
           D +TSG++++A+ PD    L  QF ++ T++ Y AL WG  E D G+I   +  +P  + 
Sbjct: 166 DKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWGNVEQDEGTIVGSIARNPKDRM 225

Query: 117 RHVV--DHEFGKHALTFWRVLERCGDWCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYA 174
           +  V  D   GKHA+T +RVLER G    VE    TGR+HQ+RVHM  IGH L  D  Y 
Sbjct: 226 QMAVMSDPSMGKHAVTHYRVLERLGYVTLVECILETGRTHQIRVHMKHIGHVLFNDERYG 285

Query: 175 HEQALA----------------AWPRLCLHASMLSFTHPQTGERLRFECPAP 210
             + L                   PR  LHA  L F HP TGE + F    P
Sbjct: 286 GHEILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHPVTGEEMYFTSELP 337