Pairwise Alignments

Query, 211 a.a., Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N1B4

Subject, 306 a.a., RNA pseudouridylate synthase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  120 bits (301), Expect = 3e-32
 Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 13/213 (6%)

Query: 6   IRIIHQDAAVLVVNKPTLLLSVPGRADDNKDCLITRLQENGYPEAR-----IVHRLDWET 60
           ++I+++DA ++VV K   LLSV       +    T L E      R     IVHRLD +T
Sbjct: 89  LKIVYEDAYIIVVEKMQGLLSVNTERQKERTAY-TILNEYVQRSGRQHRVFIVHRLDRDT 147

Query: 61  SGIILLARDPDTHRELSRQFHDRETEKAYTALCWGQPELDSGSIDLPLRYDPPTKPRHVV 120
           SG+++ A+D  T R L   +H+  T++ Y A+  G  E D  ++   L      K  +V 
Sbjct: 148 SGLMMFAKDEKTQRTLRDNWHEIVTDRRYVAVVEGTMEKDYDTVVSWLT----DKTLYVS 203

Query: 121 DHEF---GKHALTFWRVLERCGDWCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHEQ 177
             ++   G  ++T ++ ++R   +  +EL   TGR +Q+RVHM  +GHP++GDG Y  E+
Sbjct: 204 SSDYDDGGSKSITHYKTIKRANGYSLLELDLETGRKNQIRVHMQDLGHPIIGDGRYGGEE 263

Query: 178 ALAAWPRLCLHASMLSFTHPQTGERLRFECPAP 210
           +L    RL LHA  L F HP TG+ + FE P P
Sbjct: 264 SLNPIGRLALHAFKLCFYHPVTGDLMEFETPYP 296