Pairwise Alignments

Query, 453 a.a., Flagellar hook-length control protein FliK from Pseudomonas fluorescens FW300-N1B4

Subject, 579 a.a., flagellar hook-length control protein (RefSeq) from Shewanella sp. ANA-3

 Score = 61.6 bits (148), Expect = 6e-14
 Identities = 112/517 (21%), Positives = 190/517 (36%), Gaps = 99/517 (19%)

Query: 17  AQAASANAPALTAEPGDKASSFAQVYANQAQNKPSAMADGSAKPARDKVSDSVGKKDVSN 76
           AQ   AN     A PG+     A + A +  +  S + D  ++        S+     SN
Sbjct: 82  AQIGMANEMKQAAAPGESLPLEADITAMKDADSTSLLVDDQSQ-----ADSSIVDGTFSN 136

Query: 77  DKSAAPEPTVADSGK------SLPADKPAQADGKTACDDASDTAEA---------STPVA 121
           + +   E +    G       S   D  + A      + A  TA+          +  VA
Sbjct: 137 EMAKFVEASNTSIGNAKVDVSSETPDSESVASKSVGQNTAQVTAQLLQQQVSQQNAADVA 196

Query: 122 DTAPVDPALDPALVVQPVLPAPVPETPTVVATAQSQVEAPVAVVVTPAAAQTVATIDPD- 180
           DT  V+P +    V   V  A V ET T   +    +    A ++T   ++       + 
Sbjct: 197 DTESVEPQILAVDVDALVAAATVAETDTPGTSVDDSLLIDDAAILTGLRSEKFVKPPENH 256

Query: 181 -FDPEADPLDALPAVRMAMEQGG------HVSPASQAQPKAAPISAQVDGEPTSAQNFAT 233
               E +PL  L A  +   + G         PA +     + +S  VD + +     A+
Sbjct: 257 ILPIEGEPL--LGAKELGATEIGAKAINVSTQPADKVLAPQSMVSQAVDNQISIKAASAS 314

Query: 234 GMAGMLDVQA-------------DQDSTSQGGEKAFSGLIDDG------------LKDLK 268
             AG L V                  +T+  G  A      D             LKD K
Sbjct: 315 SDAGTLQVNTAAATNTNDLNTLGTNAATNVSGTTAIEPSFTDDNPSRAEISAGFLLKDAK 374

Query: 269 -----SASSDTRVDDFAN---------------RLAALTQAATPKTANALPVNQPIAMHQ 308
                 A  D+RV   ++                + +L   ATP T         +++ Q
Sbjct: 375 LAVTLDAQQDSRVAALSSGSEEADSEFKPVEFKAVPSLHSLATPATQRQDIPQVQLSLRQ 434

Query: 309 SGWTE----EVVNR--------VMYLSSANLKAADIQLQPAELGRLDIRLNMVPDQQTQV 356
              T+    E++ R        ++ + S  ++ A+I+L P ELG + +++ +  DQ TQV
Sbjct: 435 GVETQNQMQEMIQRFSPVMKQQLVTMVSQGIQQAEIRLDPPELGHMLVKVQVHGDQ-TQV 493

Query: 357 TFMSAHPSVREALDGQMHRLRDMFAQQGMGQVDVNVSDQSRGWQGQGQEQAQQGQGGRAN 416
            F       R+ ++  + RLR++  +QGM   D +VS      QG   ++ + G G    
Sbjct: 494 QFHVTQSQTRDVVEQAIPRLRELLQEQGMQLADSHVS------QGDHGQRREGGFGEAGG 547

Query: 417 ANGGRLDSADEELPATVAEVAANTTSVIGTSAVDYYA 453
           ++GG +D    +  A   ++  N  + +  S +DYYA
Sbjct: 548 SSGGNVD----DFSAEELDLGLNQATSL-NSGIDYYA 579



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 268 KSASSDTRVDDFANRLAALTQAATPKTANALPVNQPIAM 306
           K+ + DT  +DF+  LA++T  ++  T+   PV+Q +A+
Sbjct: 21  KALTQDTNSEDFSAALASVTSVSS--TSTKTPVSQDVAV 57