Pairwise Alignments

Query, 567 a.a., Serine phosphatase RsbU, regulator of sigma subunit from Pseudomonas fluorescens FW300-N1B4

Subject, 237 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.4 bits (215), Expect = 5e-22
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 19/181 (10%)

Query: 4   LEPLTILIAEDSAADRMLLSTIVRRQGHEVLTAANGAEAVEAFRSQRPHLVLMDAMMPVM 63
           LE   IL+ +D    R+ L+ +++ QGHEV  A NG E +   RS  P +V++D +MP M
Sbjct: 9   LEMSRILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGVEGLTCIRSFAPDIVMLDLVMPQM 68

Query: 64  DGFEAAQQIKALAGETLVPIIFLTSLTESEALARCLEAGGDDFLAKPYNQVILAAKVKAM 123
           DGFE  Q     A E + PI+ L++    E   R  E G DDFL KP++           
Sbjct: 69  DGFELLQ-----ARECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFS---------IK 114

Query: 124 DRLRRLQATVLEQRDLIARHHDYLLNEQ--RVAKAVFDKVAHSGCLNAPNIRYLQSPYAL 181
           + L RLQA    +R L+ R    +  EQ   +    FD+ A+   +    +   Q+ + L
Sbjct: 115 ELLVRLQAI---ERRLVQRPKPPMAVEQVATIQSVRFDETAYKITIGKHAVELTQTEFRL 171

Query: 182 F 182
           F
Sbjct: 172 F 172