Pairwise Alignments

Query, 567 a.a., Serine phosphatase RsbU, regulator of sigma subunit from Pseudomonas fluorescens FW300-N1B4

Subject, 565 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  179 bits (454), Expect = 3e-49
 Identities = 156/566 (27%), Positives = 258/566 (45%), Gaps = 29/566 (5%)

Query: 9   ILIAEDSAADRMLLSTIVRRQGHEVLTAANGAEAVEAFRSQRPHLVLMDAMMPVMDGFEA 68
           ILI ++ A     +S  +  +G+ V+   N  +A       +  L+L++   P       
Sbjct: 11  ILIVDNDAIASQSISDFIHGKGYNVIICDNLEDAFFEVSLNKIDLILVNYFQPDGTALTL 70

Query: 69  AQQIKALAGETLVPIIFLTSLTESEALARCLEAGGDDFLAKPYNQVILAAKVKAMDRLRR 128
              + +L+ E  +P++ +    E +A   C + G  DF+ KP N  +   K + +    +
Sbjct: 71  LAHLDSLSKE--IPVVVINDKKEPQAFLDCFKMGVLDFIVKPINVEVFWYKAEILLTRIK 128

Query: 129 LQATVLEQRDLIARHHDYLLNEQRVAKAVFDKVAHSGCLNAPNIRYLQSPYALFNGDLLL 188
           LQ  V +Q   + +       E+++A+ +F+ + +        I+      A F+GD+LL
Sbjct: 129 LQRKVKQQSIELEKMLYEKAREEKLARHIFEHLVNIDNNQFDFIKSFCQASANFSGDILL 188

Query: 189 AAFTPAGDMHVLLGDFTGHGLPAAVGAMPLAEVFYGMTAKGYGLSETLREMNAKLKRILP 248
              +P G++ ++L D TGHGL AA+  M L   F  M +KG+ L   + E+N K+    P
Sbjct: 189 NGVSPNGNLFIMLADSTGHGLSAAMPIMLLTSTFRAMVSKGFSLVSLIYELNGKVFDEFP 248

Query: 249 VDMFCCAALLCLSFQRGSVEVWNGGMPDGYLH----SIASGERTVLT----ARHLPLGVL 300
            D F    LL     R  + VWNGGMP  YL        S ER  +     + ++ LG+L
Sbjct: 249 EDRFVACILLEADLFRNKLYVWNGGMPPVYLRLGHDEQHSDERASINKAFKSTNMALGIL 308

Query: 301 SSQTFDDRTEVFPMAVGDRVF--LLSDGVIDTCDANEQLFGVERLEQVFAANRQPDALFE 358
              TF    ++F + +    +  L SDG+I+    +   FG+ RL  +F  N     +F 
Sbjct: 309 PPNTF--VADIFSIDLPSEGYACLFSDGLIEQPALDGSPFGMVRLNALFNENLDALPVFL 366

Query: 359 EIEQALRDFRGEARDDVSMVEVRLLEAAQLSPPTPV-YSDSGQSCPLDWSVSFEFRAATL 417
           +   +   +     DD+++  +      Q        +  S  +   +W V  +   + L
Sbjct: 367 DEHFSKYFYGDNIADDITICTLDFKRLHQWHQARDFNHLVSNLNGEFNWDV--KISGSML 424

Query: 418 KRFNPLPYLLQLLLEVHGLRAQ-SGALYSVLAELYSNALEHGVLGLDSSLKRDAAGFARY 476
              + L  L Q  L V G        +++V+AEL++NA++HGVL LDS LK D  GF  Y
Sbjct: 425 LDADYLGTLNQ-FLSVFGFATNFCQRVFTVVAELFNNAIDHGVLELDSRLKNDPEGFELY 483

Query: 477 YQQRNARLDEL-RDGYVRVHLQVTPKGEGGCLVIRVEDSGKGF--DVARVMARPVDDVRL 533
           +  R++  + L  D +V+V +      E   LVI V DSGKGF      + + P     L
Sbjct: 484 HSIRDSYAERLSSDDWVKVCITWNHMNE---LVITVADSGKGFVGFDKSISSYP----EL 536

Query: 534 SGRGVNLIRQLSDHATWSDNGRSARV 559
           SGRG++L++ L  H      G   RV
Sbjct: 537 SGRGISLVKTLCKHYELISPGNITRV 562