Pairwise Alignments

Query, 195 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N1B4

Subject, 350 a.a., sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  111 bits (277), Expect = 2e-29
 Identities = 77/204 (37%), Positives = 99/204 (48%), Gaps = 23/204 (11%)

Query: 1   VATTNRDLAAEVTAGRFREDLYYRLSVFPLAWRPLRERTADILPLAERLLAKHVNKMKHA 60
           VA TNRDL  EV AGRFREDLYYRL+V PL    LRER  DIL LAE  + +   +    
Sbjct: 145 VAATNRDLEREVAAGRFREDLYYRLNVIPLHLPALRERGGDILVLAEHFMRRFCERKGRR 204

Query: 61  VAKLSPEAQVCLIAYPWPGNVRELDNAIQRALILQQGGLIQPQDF------------CLA 108
              L+P+ +  L AY WPGNVREL+N ++R  IL    ++ P D              L 
Sbjct: 205 CLALAPDTRKVLAAYSWPGNVRELENFMERLSILADDDVVPPADLPRKILDEVGDIVSLP 264

Query: 109 GPVACAPLP----------PLASTPTRAVDVEAESAGALGDDLRRREFQMIIDTLRSERG 158
            P    PLP          P   +     D+  +    L D L   E +++ + L    G
Sbjct: 265 EPTPPDPLPVATGAASGGMPAGFSWPTITDLRDKGMN-LKDFLDTVEERLLDEALTMAEG 323

Query: 159 RRKEAAERLGISPRTLRYKLAQMR 182
            + +AAE LGI   TL  KL + R
Sbjct: 324 VKNQAAEILGIKRTTLIEKLKKKR 347