Pairwise Alignments

Query, 246 a.a., Flagellar basal-body rod protein FlgF from Pseudomonas fluorescens FW300-N1B4

Subject, 242 a.a., fagellar hook-basal body proteins from Pseudomonas stutzeri RCH2

 Score =  199 bits (507), Expect = 3e-56
 Identities = 107/244 (43%), Positives = 162/244 (66%), Gaps = 4/244 (1%)

Query: 1   VDKYLYVAMTGASQNALAQKAHANNLANISTNGFQKDLEQARSMPVFGDSFPARAFAMSE 60
           +D+  Y AMT AS+  ++ +  +NNLAN++T GF+ DLE+A+++ V G  + +R  A+ E
Sbjct: 1   MDRLGYTAMTAASRTMMSLQVRSNNLANVNTPGFRADLERAQAVAVEGYGYDSRHMALIE 60

Query: 61  RPATDFSPGALVQTGRDLDVAVQGNGWIAVQNPDGGESYVRTGSLNVDALGVLRAGNGMP 120
                 + G +V TGR+LD AV+G G I +Q+ +G E+Y R GS+ VDA G L   NG  
Sbjct: 61  NNGVSLAAGPMVATGRELDFAVKGTGLIVLQDGEG-EAYTRQGSMQVDAEGRLTL-NGRA 118

Query: 121 VVGNGGPIAVPPEQQIEVGEDGTISIRAMGEGPRVMAEVDRIKLVNPDFKNMTKGLDGSI 180
           V+G GGPI +P   ++E+G DGT+S+ A G+   +MAEVDRI+LV+    N+ K   G +
Sbjct: 119 VLGEGGPIVLPEYDRMEIGNDGTVSVMAPGDW--MMAEVDRIRLVDVPAANLMKNQAGLL 176

Query: 181 HTKDGKPAQADANVKLVSGFLESSNVNAVEEMTSVLALAKQFELHIKMMNTAKDDDQAMA 240
            T+DG+PAQ   +V+L SGFLESSNV+A++E+ S ++L + FE  +KMM  A+D   A  
Sbjct: 177 VTRDGEPAQPSEDVRLASGFLESSNVSAIDELASTMSLNRLFETQVKMMKAAEDLSDAGN 236

Query: 241 RVLQ 244
           R+++
Sbjct: 237 RMIR 240