Pairwise Alignments

Query, 297 a.a., Permease of the drug/metabolite transporter (DMT) superfamily from Pseudomonas fluorescens FW300-N1B4

Subject, 349 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.5 bits (153), Expect = 6e-15
 Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 30/292 (10%)

Query: 10  LHIGALMFGLTGVFGKLAAA--SPAIIVFGRAAFAVLALAFFARFASGT--RWQKLDAVD 65
           + +  L +G+  +  KL+ +   P  + + R   A++ ++   ++++G+  ++  LDA  
Sbjct: 46  ISVAVLFWGMLPIALKLSGSFIDPVTLTWFRFLVALI-VSILVQWSAGSLKQFAALDAKV 104

Query: 66  LRRLLLSGLLLMGHWVSFFIAVKVAGVAIATLGFASFPAFTVVLEGLIFRERIRANEILL 125
             RL+L+GL LM ++VSF  ++       A L F + P F      L F+ER+ A ++  
Sbjct: 105 WLRLILAGLFLMLNYVSFVYSLDYLAPGAAQLNFQTSPFFLAFGGVLFFKERLNAIQLSC 164

Query: 126 VVLVSIGLVLVTPDFDLASGATTGLLWAVASGLLFALLS-----LTNRASSGRIPPVQAA 180
              +++G+++    F   S      +W     + F+ LS     L  ++   R+ P    
Sbjct: 165 FASLALGMLMFFHPFLDFSATDNHEIWLGVMIVQFSALSWTTYALLQKSLLNRLSPANVL 224

Query: 181 LCQNVVVAICLLPVA-VPQLSEVRAIDWLWIGLLGVFC---TGVAHSLFVASLAVIKART 236
           L    +    + P +   Q +++ + DW     + +FC   T +A+  F  S+       
Sbjct: 225 LVIYALGIFAMAPFSDFSQFAQMNSFDW----QVALFCAANTLIAYGCFGQSMKYWPTAQ 280

Query: 237 ASVVFALEPVYG-------ITLAW----LLFDENPTLRMLIGGALIIVAIVV 277
            S + AL PV+        +++ W       DE   L  L G  +IIV+++V
Sbjct: 281 VSAMLALTPVFSFSATALVVSIGWWPEVFRADELDAL-SLFGIGVIIVSVMV 331