Pairwise Alignments

Query, 297 a.a., Permease of the drug/metabolite transporter (DMT) superfamily from Pseudomonas fluorescens FW300-N1B4

Subject, 301 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.2 bits (217), Expect = 2e-22
 Identities = 77/282 (27%), Positives = 124/282 (43%), Gaps = 20/282 (7%)

Query: 3   PRTALGALHIGALMFGLTGVFGKLAAASPAIIVFGRAAFAVLALAFFARFASGTRWQKLD 62
           P  A+    + A + G  GVF + A      I F R     + L  +    +G R Q + 
Sbjct: 5   PTQAIVLAILAASLMGTIGVFARFATMPAEHITFYRLLLGAMFLTAYM-LLTGKRDQ-IR 62

Query: 63  AVDLRRLLLSGLLLMGHWVSFFIAVKVAGVAIATLGFASFPAFTVVLEGLIFRERIRANE 122
               +R L++G +L G    +  A++   +A   +     P  T +    +F ER+    
Sbjct: 63  HRPSKRTLINGAMLAGFMAFYIEAIEYTQMATVIMIIYLAPVVTSLFAHFVFNERLNRFS 122

Query: 123 ILLVVLVSIGLVL---VTPDFDLASGATTGLLWAVASGLLFALLSLTNRASSGRIPPVQA 179
           I  V L  +G +L   VT    L      G  +A+ + + ++   L NR  S  + P Q+
Sbjct: 123 IASVALALMGFILMLPVTSSQSLYQSEIMGYFYAILALITYSGFILINRKPSA-VSPYQS 181

Query: 180 ALCQNVVVAICLLPVAV--PQLSEVRAIDWLWI-----GLLGVFCTGVAHSLFVASLAVI 232
            L Q  V A+CLLP+ +  P +  +  + WL       G L + C        V +L  +
Sbjct: 182 TLVQLSVGALCLLPLMLTTPLVPSLNQLTWLLAIGFLPGFLAILCA-------VKALNQL 234

Query: 233 KARTASVVFALEPVYGITLAWLLFDENPTLRMLIGGALIIVA 274
            + T   +  +EPV  + LAW LF+E  T + L+G ALII+A
Sbjct: 235 PSVTYGTLSYVEPVVVVVLAWWLFNEALTAQQLMGVALIILA 276