Pairwise Alignments

Query, 646 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N1B4

Subject, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  111 bits (277), Expect = 1e-28
 Identities = 118/503 (23%), Positives = 216/503 (42%), Gaps = 38/503 (7%)

Query: 160 LLSAVFGGWLLRRQLRPLDNMVKQAEAISKREFRSLP-KLPRTPELKRVVLAMNQMVEKL 218
           LL+ +   +  ++  RP+  ++    +++  +   LP +L    EL  +      M +  
Sbjct: 172 LLTTILLLFFYQKLSRPITMLITWVNSLNDTQRSPLPLRLTHDDELSELASTFQSMWK-- 229

Query: 219 KALFAEEAARSENLRAESYQDALTGLANRRLLDEQLADQLLVSEQSRD-GHLLMLRINDL 277
                +E A S+ L   +Y D+LTGLANR LL ++L+D +  ++ S   G L  L ++  
Sbjct: 230 ----GKELAESK-LNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRF 284

Query: 278 IGLNQRLGGQRTDALIGAVGELLKRLTQPPERRTWLAARNRGGEFSLLTPGLDNKDAARV 337
             +N  LG    D LI AV   ++  T    +  +L+AR  G EF++L P L    A  V
Sbjct: 285 KTINDSLGHTIGDQLIKAVALRMEAWT----KNDYLSARIGGDEFAVLIPYLSPAKAEEV 340

Query: 338 ASEISATLENLRLTGASDCMPVAHLGVVAYHP-GEPASEVLLRLDQALTQARQHPERPWV 396
           A ++   + N              +G+  +   G    +VL + D AL +A+      ++
Sbjct: 341 AKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFM 400

Query: 397 YQAHADTAPNHSQHDWRSWIDEALTEGKMQLYFQPVVQCADTSQVLHHKVLARLLDPQGE 456
           +      A   S  +    + EAL + +++L++QP V   +   ++  + L R   P+  
Sbjct: 401 FYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVD--EQHNIIGVEALIRWNHPKRG 458

Query: 457 AIVAGHFLPWIERLGWSARFDLAMLETTLEYLAANRWP-----------LALSLSGSTLR 505
            +  G F+P  E  G        ++E      A  +W            LA+++S     
Sbjct: 459 LLPPGVFMPIAEETGQILPIGNWIIEQACYQYA--QWKKQGILPPHFRRLAINISPLQFA 516

Query: 506 DQAQLQQILDLLESLPELAPLLILEIDERQL-----PPPEELQRLSHSLLNTGYRIGLQH 560
            ++ ++Q+   L         + LEI E  L        E++ +L  S ++    I +  
Sbjct: 517 QESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQIS----ISIDD 572

Query: 561 FGGSFSQIGNLTQLGLAYLKIDGAYIRGIDEQTDKRLFIEAIFRATNSIDLPLIAEMVET 620
           FG  +S +  L  L +  LKID +++  +    + +  ++ I      ++L +IAE VE 
Sbjct: 573 FGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVED 632

Query: 621 QGELEVIRELGLFGVMGRLIGPP 643
             EL  +++LG     G L   P
Sbjct: 633 TSELAALKKLGCNQFQGYLFDKP 655