Pairwise Alignments

Query, 646 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N1B4

Subject, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  199 bits (507), Expect = 2e-55
 Identities = 176/652 (26%), Positives = 312/652 (47%), Gaps = 24/652 (3%)

Query: 1   MSLRKQLF-LAICLFLLVAFSGSFFVSLESSREQVLSQLRSHAQDAATALGLSLTAQID- 58
           M+L +Q++ L   LFLLV  S  + V    ++  +  Q+ S   +A+T+LGL LT  ++ 
Sbjct: 1   MTLFRQIYSLLFSLFLLVVASLGY-VQFTETQSFLTKQMESDLNNASTSLGLMLTPALEA 59

Query: 59  -DPAMIELMVSSIFDSGYFSSIRVI-DIENEQVLVERSAPAQIEGVPQWFVSVVNLRPQG 116
            D    E +V+ IF+ GY+++I++I  ++ +Q   E + P +I+ VPQWF+++   +   
Sbjct: 60  GDTVAAETLVNVIFEGGYYNNIKLIWMVDGKQQ--EWNNPIKIDDVPQWFINLNLFKTIK 117

Query: 117 GDALITRGWQQAARVEVLSNPQFALAKLWDSSLGSLIWLLICGLLSAVFGGWLLRRQLRP 176
            ++ IT GW Q A++E+ ++P F   +LW     +LI   +  L++       L   L+P
Sbjct: 118 KESTITSGWLQLAQLEITAHPGFGYHELWRIMSNTLIVFSLLFLVAIFTARLGLTWILKP 177

Query: 177 LDNMVKQAEAISKREFRSLPKLPRTPELKRVVLAMNQMVEKLKALFAEEAARSENLRAES 236
           L+ + + A+ I+ R+F     LP T ELK +V A N M  +LK LF        +LR ++
Sbjct: 178 LNALSEHAKKIAARQFGPDMPLPSTTELKDLVTAFNSMSAQLKHLFQSLDEEVGSLRKKN 237

Query: 237 YQDALTGLANRRLLDEQLADQLLVSEQSRDGHLLMLRINDLIGLNQRLGGQRTDALIGAV 296
             D  +GL NR+ +  +L   L  SE S  G L + +++ L  ++ + G Q  D  I  +
Sbjct: 238 LTDPASGLPNRQYVVSRLNGWL--SEPS-SGALFLAKLDWLEEVHSKYGYQVRDETIRLL 294

Query: 297 GELLKRLTQPPERRTWLAARNRGGEFSLLTPGLDNKDAARVASEISATLENLRLTGASDC 356
            E  K + Q  E    + AR    EF+ L   +++   ++    +  T+ N  ++ A  C
Sbjct: 295 AE--KLVQQLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTI-NQEISKAG-C 350

Query: 357 MPVAHLGV-VAYHPGE-PASEVLLRLDQALTQARQHPERPWVYQAHADTAPNHSQHDWRS 414
            P  +  + VA   G+   S++L + D AL +A +  +    +          ++  WR 
Sbjct: 351 KPNENFAIGVAERVGQMKVSDILAQADNALQKALK--DNKTFHWFETTEQQIFTREQWRD 408

Query: 415 WIDEALTEGKMQLYFQPVVQCADTSQVLHHKVLARLLDPQGEAIVAGHFLPWIERLGWSA 474
            +  A++  K +  +QP+  C      +  + L   L+   +   AG F+P+IE L   +
Sbjct: 409 NLSHAISNKKFKFRWQPIQFC--NGDGVTQRELYCQLELGDKLTHAGQFMPYIELLSLGS 466

Query: 475 RFDLAMLETTLE--YLAANRWPLALSLSGSTLRDQAQLQQILDLLESLPELAPLLILEID 532
             D  ++ET  E   L  N  PLA++L+  +L D    Q +   L + P++  +     +
Sbjct: 467 LLDKCLIETVYEQKLLERNYEPLAINLTHQSLSDSQFHQWLNHFLRNAPQVERMCFEIPE 526

Query: 533 ERQLPPPEELQRLSHSLLNTGYRIGLQHFGGSFSQIGNLTQLGLAYLKIDGAYIRGIDEQ 592
                  E   RL + + + G + G+ HFG  F  +  L  L  +Y+K+D ++    DE 
Sbjct: 527 AGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAY-YDEA 585

Query: 593 TDKRLFIEAIFRATNSIDLPLIAEMVETQGELEVIRELGLFGVMGRLIGPPE 644
           +       AI      +D+ +I   ++ + +LE   EL      G  I PPE
Sbjct: 586 SHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQG-FIAPPE 636