Pairwise Alignments

Query, 646 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N1B4

Subject, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (268), Expect = 1e-27
 Identities = 113/446 (25%), Positives = 206/446 (46%), Gaps = 29/446 (6%)

Query: 221 LFAEEAARSENLRAESYQ---DALTGLANRRLLDEQLADQLLVSEQSRDGHLLMLRINDL 277
           LF++ + R +  +   YQ   D+LTGLANR  L  Q+ + +     +     +++ +++ 
Sbjct: 297 LFSDVSERKKAAQLIKYQANNDSLTGLANRNALFRQIQELINADSLTPGFSFMLMDLDNF 356

Query: 278 IGLNQRLGGQRTDALIGAVGELLKRLTQPPERRTWLAARNRGGEFSLLTPGL-DNKDAAR 336
             +N   G  + D L+  + E +K    P      + AR  G EF++L PG+   ++ ++
Sbjct: 357 KQVNDTYGHDKGDVLLVQMVEQVKICLDPQA----VFARLGGDEFAILLPGVVTQRELSQ 412

Query: 337 VASEISATL-ENLRLTGASDCMPVAHLGVVAYHPGEPASEVLLRL-DQALTQARQHPERP 394
           +A +I+  +     L+          +G+  +       E LL   DQA+  ++ +    
Sbjct: 413 LADKINKQVYRRYELSHDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNR 472

Query: 395 WVYQAHADTAPNHSQHDWRSWIDEALTEGKMQLYFQPVVQCADTSQVLHHKVLARLLDPQ 454
           + +             +  + + +AL +   +LYFQP+V  A T  ++  +VL R    +
Sbjct: 473 YHFFTEQMQQNAERIANLHTLLKQALEQNAFELYFQPIVD-ATTGLIVRAEVLLRW-QHE 530

Query: 455 GEAIVAGHFLPWIERLGWSARFDL----AMLETTLEYLAANRWPLALSLSGST------- 503
           G+ I    F+P  E  G           A+++T +E  A   WP++L+++ ST       
Sbjct: 531 GQFISPDEFIPIAENSGLIVSIGRCVRQAVMQTIVEMQALG-WPMSLAINVSTFEFWSHE 589

Query: 504 LRDQAQLQQILDLLESLP-ELAP--LLILEIDERQLPPPE-ELQRLSHSLLNTGYRIGLQ 559
           L+D+       D++E L  E  P  L+ LEI E  L      L ++ + L   G +I L 
Sbjct: 590 LQDEF-CDSFTDIIEGLGVEDFPYELITLEITESLLMKKHAHLIQVLNELRARGIKISLD 648

Query: 560 HFGGSFSQIGNLTQLGLAYLKIDGAYIRGIDEQTDKRLFIEAIFRATNSIDLPLIAEMVE 619
            FG  +S +  L    +  +KID ++I  + E       IEAI R +++++L + AE VE
Sbjct: 649 DFGTGYSSLSYLANFPIDQIKIDKSFIDRLAEGERHLALIEAIVRLSHALNLRVTAEGVE 708

Query: 620 TQGELEVIRELGLFGVMGRLIGPPEP 645
           TQ +L+V+ +  +  + G L   P P
Sbjct: 709 TQEQLQVMMDNHIQEIQGYLFYKPIP 734