Pairwise Alignments

Query, 646 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N1B4

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  114 bits (284), Expect = 3e-29
 Identities = 117/442 (26%), Positives = 200/442 (45%), Gaps = 27/442 (6%)

Query: 220 ALFAE--EAARSENLR-AESYQDALTGLANRRLLDEQLADQLLVSEQSRDGHLLM-LRIN 275
           ALF++  +  +SE+L   ++  D LTGL NRR+L E L+ ++  ++++R+   LM L ++
Sbjct: 553 ALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLD 612

Query: 276 DLIGLNQRLGGQRTDALIGAVGELLKRLTQPPERRTWLAARNRGGEFSLLTPGL-DNKDA 334
               +N  LG    D L+      LK   +  +    + AR  G EF+++   + D+K  
Sbjct: 613 YFKEVNDTLGHAMGDLLLIETASRLKSCVRDAD----VVARLGGDEFTVVLSSMADHKGI 668

Query: 335 ARVASEISATLENLRLTGASDCMPVAHLGVVAYHPGEPASEVLLR-LDQALTQARQHPER 393
            RVA  I   +      G       A +G+  Y    P+ E LL+  DQA+  A+     
Sbjct: 669 ERVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRN 728

Query: 394 PWVYQAHADTAPNHSQHDWRSWID--EALTEGKMQLYFQPVVQCADTSQVLHHKVLARLL 451
            + Y     +   ++++  R   D  +A+   + +L++QP+V  A T +VL  + L R  
Sbjct: 729 RFNY--FTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMA-TGEVLKAEALLRWF 785

Query: 452 DPQGEAIVAGHFLPWIERLGWSARFDLAMLETTLEYLAANRWPLALSLSGST------LR 505
            P+  ++    F+P  E  G        + E      A  R  L + +  S        R
Sbjct: 786 HPERGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFR 845

Query: 506 DQ-AQLQQILDLLESLPELAPLLILEIDERQLPPPEELQRLSHSLL---NTGYRIGLQHF 561
           D+ A L   L+LL+ L      + +EI E  L   +    ++  LL   + G ++ L  F
Sbjct: 846 DEGALLHNWLELLQQLDVTGAGVCVEITEGLLL--DASMGVTEKLLAYRDAGVQVSLDDF 903

Query: 562 GGSFSQIGNLTQLGLAYLKIDGAYIRGIDEQTDKRLFIEAIFRATNSIDLPLIAEMVETQ 621
           G  +S +  L +  + YLKID ++ R ID   +     EAI    + + + +IAE VET+
Sbjct: 904 GTGYSSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETE 963

Query: 622 GELEVIRELGLFGVMGRLIGPP 643
            + +V+   G     G L   P
Sbjct: 964 AQRQVLLRAGCDYGQGYLFSKP 985