Pairwise Alignments

Query, 646 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N1B4

Subject, 728 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (280), Expect = 6e-29
 Identities = 108/437 (24%), Positives = 192/437 (43%), Gaps = 20/437 (4%)

Query: 223 AEEAARSENLRAESYQDALTGLANRRLLDEQLADQLLVSEQSRDGHLLMLRINDLIGLNQ 282
           +E+   ++ L   +  DALTGL NR L  E L + LL ++      +  + ++    +N 
Sbjct: 286 SEKYRLADELSFHANYDALTGLPNR-LHFEALLENLLHAKDDMPTCVAFIDVDQFQVINN 344

Query: 283 RLGGQRTDALIGAVGELLKRLTQPPERRTWLAARNRGGEFSLLTPGLDNKDAARVASEIS 342
             G Q  D L+  +   LK+L     R+  + AR  G EF +L    +   A  +A  I 
Sbjct: 345 ISGHQAGDKLLCQLALRLKQLV----RKGDIVARLGGDEFGILMHYCNVDSAQHIAKRIC 400

Query: 343 ATLENLRLTGASDCMPVA-HLGVVAYHPGEPASE---VLLRLDQALTQARQHPERPWVYQ 398
             L        + C  V+  +G+  ++    AS+   V+   D A   A+      W   
Sbjct: 401 TQLATHEFIWENRCHNVSVSMGIAKFN--RSASDIYAVMSHADAACRLAKDKGRNGWHLY 458

Query: 399 AHADTAPNHSQHDWRSWID--EALTEGKMQLYFQPVVQCADTSQVLHHKVLARLLDPQGE 456
           +  D        +  + +D   AL   + +LYFQ +         LH +VL R++ P G 
Sbjct: 459 STKDPKMTRLYTEMMASVDIVSALALNQFELYFQSIAPLNYDESGLHLEVLLRMVQPNGN 518

Query: 457 AIVAGHFLPWIERLGWSARFDLAMLETTLEYLAANR--WP----LALSLSGSTLRDQAQL 510
            +    FLP  ER   +A+ DL +++  L++ + +   W     ++++LS ++L D   +
Sbjct: 519 IVSPAIFLPAAERYNLAAKIDLWVIDNLLKWGSNHLAIWQQLGLVSVNLSATSLGDSEFM 578

Query: 511 QQILDLLESLPELAPLLILEIDERQ-LPPPEELQRLSHSLLNTGYRIGLQHFGGSFSQIG 569
             +   L + PEL   L +EI E   +   ++  +L   L     ++ L  FG  FS   
Sbjct: 579 NWLEMRLMTEPELVDKLCIEITETAAVSQLDQATKLIEVLRPLNCQLALDDFGAGFSSFA 638

Query: 570 NLTQLGLAYLKIDGAYIRGIDEQTDKRLFIEAIFRATNSIDLPLIAEMVETQGELEVIRE 629
            L +L + Y+KIDG ++  + E    +  ++AI +    +   ++AE VE+      ++ 
Sbjct: 639 YLKRLNVDYVKIDGQFVINLCEDGADQAIVKAICQLGQDMGFDVVAEFVESTEIGLKLKS 698

Query: 630 LGLFGVMGRLIGPPEPM 646
           LG+    G  I  P P+
Sbjct: 699 LGVDYAQGYAINKPTPL 715