Pairwise Alignments

Query, 646 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N1B4

Subject, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  102 bits (255), Expect = 5e-26
 Identities = 98/434 (22%), Positives = 184/434 (42%), Gaps = 19/434 (4%)

Query: 224 EEAARSENLRAESYQDALTGLANRRLLDEQLADQLLVSEQSRDGHLLMLRINDLIGLNQR 283
           +E      L+  +  D +TGL NR+  +EQL +    + Q+R   +  L +     +N  
Sbjct: 416 QEELLKHQLQKRANFDGITGLLNRQAFEEQLPE---FASQARSLAVCYLDLEQFKLINDS 472

Query: 284 LGGQRTDALIGAVGELLKRLTQPPERRTWLAARNRGGEFSLLTPGLDNKDAARVASEISA 343
            G    D ++  V   ++    P E    L AR  G EF L+         A++  +I A
Sbjct: 473 CGHTAGDRMLAMVARAIQSCLGPQE----LLARIGGDEFGLVICDRTALAVAQLLKQIIA 528

Query: 344 TLENLRLTGASDCMPVAHLGV-VAYH--PGEPASEVLLRLDQALTQARQHPERPWVYQAH 400
            + +L++    +C     L + VA+   P   A E+L   D A   A+            
Sbjct: 529 QV-SLQVLHDKNCNYKVGLSIGVAFGRAPYINAQELLKDADIACIAAKAKGTNQIHIYDD 587

Query: 401 ADTAPNHSQH--DWRSWIDEALTEGKMQLYFQPVVQCADTSQVLHHKVLARLLDPQGEAI 458
            D    + ++   W   I +A+ E ++ LY+QP+     +S+    +VL R+ +P G  +
Sbjct: 588 KDKELTYQRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEVLLRIQEPCGRIL 647

Query: 459 VAGHFLPWIERLGWSARFDLAMLETTLEYLAANR--WP---LALSLSGSTLRDQAQLQQI 513
               F+   ER       D  ++     +L+ N   W    ++++LSG++L  +  ++ I
Sbjct: 648 APAQFIAAAERFKLMPEIDKEVIRKAFLWLSLNSQLWQDHCISINLSGNSLGAEGMVEYI 707

Query: 514 LDLLESLPELAPLLILEIDERQ-LPPPEELQRLSHSLLNTGYRIGLQHFGGSFSQIGNLT 572
               +     +  +  EI E   +        +   L   G+   L  FG  F+  G L 
Sbjct: 708 AKQQQIFDIPSQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFALDDFGSGFASYGYLR 767

Query: 573 QLGLAYLKIDGAYIRGIDEQTDKRLFIEAIFRATNSIDLPLIAEMVETQGELEVIRELGL 632
           +L + Y+KIDG +++ +         +++I      + +  +AE VE Q  ++ ++ +G+
Sbjct: 768 ELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQEIIDRLQTIGI 827

Query: 633 FGVMGRLIGPPEPM 646
               G  IG P+P+
Sbjct: 828 NYAQGYAIGRPQPL 841