Pairwise Alignments

Query, 143 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N1B4

Subject, 278 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 3   DNQVLNNVVFKAALSLESLDHAVRHCPRRSLG---DPRIERALSTLDGLLTTKVPASALA 59
           DN++L   +  ++L+     H  R+ P   LG    P +    S +D      +    LA
Sbjct: 135 DNRLLRESLVYSSLTQLMARHG-RNYPCEHLGANAKPALALVKSFIDDHPAADISLEDLA 193

Query: 60  AEAHLSLSQLQRLFASHLGLPVRRLVLWRRLRLSMVLILAGSAVTDAAHEAGFADSAHFS 119
             A LS   L + F  + GLP     +  R+RL+   I  G+ + D A + GF D +H +
Sbjct: 194 TLAGLSPYYLLKQFQHYYGLPPHAYQIQARVRLAKAKIKQGTRLLDVALDCGFHDQSHLN 253

Query: 120 RSLKKLFGVTARQALQHI 137
           R  KK  GVT  Q  + I
Sbjct: 254 RHFKKTVGVTPGQFAKEI 271