Pairwise Alignments

Query, 272 a.a., O-antigen export system permease protein RfbD from Pseudomonas fluorescens FW300-N1B4

Subject, 259 a.a., cell surface polysaccharide export ABC-2 transporter permease, close relative of Y20822wzm2 from Sinorhizobium meliloti 1021

 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 59/259 (22%), Positives = 107/259 (41%), Gaps = 30/259 (11%)

Query: 21  LIRALVQREIVGRYRGSIMGMLWSLFNPIVMLVIYTFVFSVVFKARWSVDSSSKTEFALM 80
           ++ AL+ RE+  R+     G +W+L +P   +++ T +F  + +A      +  T FAL 
Sbjct: 13  VVGALLVREMATRFGSKPGGYVWALLDPAAHILLMTVIFQAIARA-----PALGTSFALF 67

Query: 81  LFAGLIVFNLFAECINRAPGLIIGNVNYVKKVVFPLEILPWVTLGAAMFHFLVSLSVWLI 140
              G I F  +        G +   V   K ++    + P  T+ A    F++ +    +
Sbjct: 68  FATGYIAFQFY----QAMTGYLNAAVKANKALLSYPNVAPIDTIVA---RFVLQMGTTSL 120

Query: 141 AYLIFFGKLQYTVLLLPVFLAPLMIFVVGLVWFLASMGVYLRD---------VSQIIGVF 191
              I  G +  T+ +      P ++  VGL   L  +GV + +           Q+  + 
Sbjct: 121 VAFIVLGTIVATMRVDTDIHWPSILEAVGLA-CLFGLGVAMVNCVLFLKYPLYEQVFSIV 179

Query: 192 TSVLMFLSPIFYPITALPEQYRHLLFLNPLTPAIEDARALLFRGELPSFVHLG----FYY 247
              L  +S +F+   ++P  YR L+ +NPL   I   R    +G  P +  +G    + Y
Sbjct: 180 NRPLFLISGVFFLPDSIPAPYRDLVLINPLVHVIMGFR----KGFYPEYRAIGLDMDYLY 235

Query: 248 IAAALVFWLGFAWFQKTRK 266
             A L  + G   F  +RK
Sbjct: 236 GIAFLTLFAGMLVFTLSRK 254