Pairwise Alignments

Query, 272 a.a., O-antigen export system permease protein RfbD from Pseudomonas fluorescens FW300-N1B4

Subject, 294 a.a., ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  192 bits (488), Expect = 7e-54
 Identities = 103/266 (38%), Positives = 159/266 (59%), Gaps = 2/266 (0%)

Query: 7   SPKEMLNSVWRNRGLIRALVQREIVGRYRGSIMGMLWSLFNPIVMLVIYTFVFSVVFKAR 66
           +P  +L ++   R L   L++R+I  RYRG+ +G LW L  P+++L +YTFVF V+++A 
Sbjct: 31  NPVTLLRTLVARRDLFMQLLRRDIAARYRGTCLGWLWVLATPVLVLGVYTFVFGVIYQA- 89

Query: 67  WSVDSSSKTEFALMLFAGLIVFNLFAECINRAPGLIIGNVNYVKKVVFPLEILPWVTLGA 126
            S  S    ++ALMLF G + + LFAE    AP LI    ++V+K+ FPLEILP V LG 
Sbjct: 90  -SRFSGGVGDYALMLFCGFVPWWLFAEVTGGAPTLIQARPSFVQKMCFPLEILPVVHLGV 148

Query: 127 AMFHFLVSLSVWLIAYLIFFGKLQYTVLLLPVFLAPLMIFVVGLVWFLASMGVYLRDVSQ 186
           ++F+ L +L + L A  +       T+L +P    PL ++ +G  + L+++GV+LRD+  
Sbjct: 149 SLFNSLAALVILLAALAMKGMPFHLTLLWIPALYVPLCLWSLGGAFLLSALGVFLRDMQH 208

Query: 187 IIGVFTSVLMFLSPIFYPITALPEQYRHLLFLNPLTPAIEDARALLFRGELPSFVHLGFY 246
            + V   +L F +PI Y +  +PEQ+R LL  NP+T  +E  R +++ G+ P  V LG  
Sbjct: 209 AVSVALQLLFFATPIVYQLDMVPEQWRFLLRCNPMTEIVEAFRHVIYFGQAPEPVSLGIV 268

Query: 247 YIAAALVFWLGFAWFQKTRKGFADVL 272
            +  A V W+G   F + RK FADVL
Sbjct: 269 TVLGACVLWVGHLVFMQARKAFADVL 294