Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 377 a.a., cytochrome c oxidase, subunit II from Pseudomonas stutzeri RCH2

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 60/286 (20%), Positives = 131/286 (45%), Gaps = 14/286 (4%)

Query: 25  ATPAASNWGSIDTTLFITLIISGIFFIAITVFMAVAVMRYRHKEGSRAHYQPESKKLETW 84
           AT  + +   +   +F   ++ G+    + ++  +A  R + +  +  H   E+ ++E  
Sbjct: 32  ATDVSRSVFDLHMAIFWICVVIGVLVFGVMIYSMIAHRRSKRQHSAHFH---ENTRVEVL 88

Query: 85  LIIVTSIGIAAMLAPGLVVYSDFINVPKNAYELEVVAQQWQWAFRFAGQDGKLGKSDIKF 144
             ++  + +  M  P         +  ++  ++++   QW+W +++ G+D +       F
Sbjct: 89  WTVIPLLILVGMAVPATRTLIHIYDSSESDVDVQITGYQWKWHYKYLGEDVEF------F 142

Query: 145 VDFTNPLG-LDPKDPVGQDDVLIKSNEVRLPLDQPVKVLLRSKDVLHNFYIPQIRSKMDM 203
            + T P   ++ + P G+  +L     + +P+   V+ L+ + DV+H++++P +  K D 
Sbjct: 143 SNLTTPREQINNQAPKGEHYLLEVDEPLVIPVGAKVRFLITAADVIHSWWVPDLAVKKDA 202

Query: 204 VPGMVSYFWFTPTKTGKYEILCAEYCGLGHYNMRGQMIVEEQGAFDQWLNSQPTFAQTLT 263
           +PG ++  W    + G Y   C E CG  H  M   + V+ Q  +  WL  +   A  L 
Sbjct: 203 IPGFINESWTRVEQPGIYRGQCTELCGKDHGFMPVVVEVKSQEDYATWLGEKKAEAAKLA 262

Query: 264 --TAAKPSQDSVLEKGRLLVEKYGCGACHSQDGSTRLGPGWKGLYG 307
             T+ + + + + E+G+  V +  C +CH Q G   + P +  L G
Sbjct: 263 ELTSKEWTLEELNERGQ-KVYQTACASCH-QAGGEGIPPMFPALKG 306