Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 294 a.a., cytochrome C oxidase subunit II protein from Sinorhizobium meliloti 1021

 Score = 83.6 bits (205), Expect = 8e-21
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 6/228 (2%)

Query: 49  FFIAITVFMAVAVMRYRHKEGSRAHYQPESKKLETWLIIVTSIGIAAMLA----PGLVVY 104
           F I IT+F+ + ++    K    A+  P      T + +V ++G   +L     P   + 
Sbjct: 54  FIIPITLFVLLLLVIVVVKFRESANPVPSRTSHNTLIEVVWTVGPVIVLLFLAIPSFQLL 113

Query: 105 SDFINVPKNA-YELEVVAQQWQWAFRFAGQDGKLGKSDIKFVDFTNPLGLDPKDPVGQDD 163
           +  +  P+N    ++    QW W++ +   +  L    +   D  +  GL  +D      
Sbjct: 114 TAQLTPPENPDLTVKATGNQWYWSYEYEVGESPLSFDSLLLKD-EDRAGLGKEDKAQYPR 172

Query: 164 VLIKSNEVRLPLDQPVKVLLRSKDVLHNFYIPQIRSKMDMVPGMVSYFWFTPTKTGKYEI 223
           +L   NEV +P+ + V++L+ + DV+H F +P    K+D VPG ++  WF   + G Y  
Sbjct: 173 LLAVDNEVVVPVGKTVRLLVTAADVIHAFAMPAFGVKIDAVPGRLNETWFKADREGLYYG 232

Query: 224 LCAEYCGLGHYNMRGQMIVEEQGAFDQWLNSQPTFAQTLTTAAKPSQD 271
            C+E CG  H  M   + V  Q  +D WL +  T       A   S D
Sbjct: 233 QCSELCGKDHAYMPIAVRVVAQDKYDAWLAAAATNVGEANKALMASVD 280