Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 327 a.a., cytochrome c oxidase subunit II from Sinorhizobium meliloti 1021

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 73/280 (26%), Positives = 121/280 (43%), Gaps = 51/280 (18%)

Query: 27  PAASNWGSIDTTLFITLIISGIFFIAITVFMAVAVMRYRHKEGSRAHYQPESKKLETWLI 86
           P+ +    I T  ++ ++ S    +A+ +  AVA+      E  RA    E       ++
Sbjct: 27  PSGAEAERIGTLSWLLVLFSTAILVAVCLITAVALFG---GERWRARIAGER------IV 77

Query: 87  IVTSIGIAAMLAPGLVVYSDFINVP-------KNAYELEVVAQQWQWAFRFAGQDGKLGK 139
           I   +    +    L++Y  ++  P       + A  +EVV ++W W   +  + G+  +
Sbjct: 78  IGGGLVFPILALSVLLIYGFYLMSPGTTEARSQGALRIEVVGERWWWRVTYVDEAGRRIE 137

Query: 140 SDIKFVDFTNPLGLDPKDPVGQDDVLIKSNEVRLPLDQPVKVLLRSKDVLHNFYIPQIRS 199
           S                           +NE+RLP+ +PV++ L S DV+H+F++P++  
Sbjct: 138 S---------------------------ANEIRLPVGRPVELELTSADVIHSFWVPRLAG 170

Query: 200 KMDMVPGMVSYFWFTPTKTGKYEILCAEYCGLGHYNMRGQMIVEEQGAFDQWLNSQPTFA 259
           K+DM+PG  +      TK G     CAEYCG  H  M   +I   +  F  WL  +   A
Sbjct: 171 KLDMIPGHTNTLTLQATKAGISRGQCAEYCGGPHAFMSFYVIAMPEDQFSSWLAGEAGDA 230

Query: 260 QTLTTAAKPSQDSVLEKGRLLVEKYGCGACHSQDGSTRLG 299
               +AAKP Q +    G+ L    GC ACH   G+   G
Sbjct: 231 ----SAAKPDQAA----GQALFLSSGCAACHRVRGTDARG 262



 Score = 28.5 bits (62), Expect = 4e-04
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 387 GQRLAESLGCLACHSVDGSKGVGPSWQGL--YGETVTLADGT---SIKADEGYIKDSILN 441
           GQ L  S GC ACH V G+   G     L   G   +LA  T    + A   +I+D    
Sbjct: 240 GQALFLSSGCAACHRVRGTDARGTIGPDLTHVGSRHSLAAATLENDVAAFVRWIRD---- 295

Query: 442 PGAKIVKGYAAVMPAFTLSDQELNALIAFI 471
              + VK    + P    +D EL  L A++
Sbjct: 296 --GQHVKPENLMPPFEIFTDDELRQLAAYL 323