Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 375 a.a., cytochrome c oxidase subunit II from Pseudomonas fluorescens SBW25-INTG

 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 14/261 (5%)

Query: 37  TTLFITLIISGIFFIAITVFMAVAVMRYRHKEGSRAHYQPESKKLETWLIIVTSIGIAAM 96
           T  +I ++I  I F A+   M V    +R   G  A    ES  +E    +V  + + AM
Sbjct: 45  TIFWICVVIGIIVFGAMFWSMIV----HRRSTGQVAAKFHESTTVEILWTVVPLLILIAM 100

Query: 97  LAPGLVVYSDFINVPKNAYELEVVAQQWQWAFRFAGQDGKLGKSDIKFVDFTNPLG-LDP 155
             P      +  +  ++  +++V   QW+W +++ GQD +       F +   P   +  
Sbjct: 101 AIPATKTLINIYDSSESDIDIQVTGYQWKWHYKYLGQDVEF------FSNLATPAEQIHN 154

Query: 156 KDPVGQDDVLIKSNEVRLPLDQPVKVLLRSKDVLHNFYIPQIRSKMDMVPGMVSYFWFTP 215
           +   G+  +L     + LP+   V+ L+ + DV+H++++P    K D +PG V+  W   
Sbjct: 155 QATKGEHYLLEVDQPLVLPVGAKVRFLVTAADVIHSWWVPAFAVKRDAIPGFVNEAWTRV 214

Query: 216 TKTGKYEILCAEYCGLGHYNMRGQMIVEEQGAFDQWLNSQPTFAQTL--TTAAKPSQDSV 273
            K G Y   CAE CG  H  M   + V+ +  ++ WL  +   A  L   T+ + + + +
Sbjct: 215 EKPGIYRGQCAELCGKDHGFMPIVVEVKSKADYETWLGERKEEAAKLKELTSKEWTLEEL 274

Query: 274 LEKGRLLVEKYGCGACHSQDG 294
           + +G   V    C ACH  +G
Sbjct: 275 VARGD-KVYHTTCVACHQAEG 294