Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 521 a.a., cytochrome c oxidase, subunit II (RefSeq) from Shewanella loihica PV-4

 Score = 94.4 bits (233), Expect = 9e-24
 Identities = 89/364 (24%), Positives = 149/364 (40%), Gaps = 54/364 (14%)

Query: 51  IAITVF--MAVAVMRYRHKEGSRAHYQPESKKLETWLIIVTSIGIAAMLAPG---LVVYS 105
           I + VF  M  A++ +R  +G+ A    ES K+E    +V  + +  M  P    L+   
Sbjct: 51  IGLVVFGVMIYAIINHRRSKGAVAANFHESTKVEIAWTLVPFVILILMAIPATKTLIAME 110

Query: 106 DFINVPKNA-YELEVVAQQWQWAFRFAGQDGKLGKSDIKFVDF--TNPLGLDPKDPVGQD 162
           D    P NA   +++   QW+W + +  QD       I +     T    ++ K+  G+ 
Sbjct: 111 D----PSNADLTIKITGSQWKWHYSYFDQD-------ISYYSLLATPREQIEGKETKGEH 159

Query: 163 DVLIKSNEVRLPLDQPVKVLLRSKDVLHNFYIPQIRSKMDMVPGMVSYFWFTPTKTGKYE 222
            +L     + LP+++ ++ L+ S+DV+H++++P    K D  PG ++  W    K G Y 
Sbjct: 160 YLLEVDKPLVLPVNRKIRFLMTSEDVIHSWWVPAFAVKKDANPGFINEAWTRIDKPGIYR 219

Query: 223 ILCAEYCGLGHYNMRGQMIVEEQGAFDQWLNSQPTFAQTLTTAAKPSQDSVLEKGRLL-- 280
             CAE CG  H  M   + V  +  FD W+  Q   A      A+ +    L K  L+  
Sbjct: 220 GQCAELCGKDHGFMPIVVQVLSEADFDNWIVEQEAQASAAAAEAQAALSKTLSKEELMAQ 279

Query: 281 ---VEKYGCGACHSQDGSTRLGPGWKGLYGRTEQFADGTRALVDEAYLKESILDPKARLV 337
              V    C ACH  +G+     G  G++           +L+    +K  + D    ++
Sbjct: 280 GEQVYMARCAACHQPNGA-----GLPGVF----------PSLIGSPIIKGPVADHLDVVL 324

Query: 338 QGYPPVMV---AYTLTEDELGAVVAL------------IKSLGAAQQEPSASEKLDRGDD 382
            G     +   A  LT  E+ AVV              +++    Q    AS   D G D
Sbjct: 325 HGRSGTAMQAFAQQLTATEIAAVVTFERNAWGNDTGDTVQAADVNQANSGASSGADTGAD 384

Query: 383 LATQ 386
            A +
Sbjct: 385 AAAE 388