Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 359 a.a., membrane protein containing cytochrome c oxidase, subunit II domain from Marinobacter adhaerens HP15

 Score = 88.2 bits (217), Expect = 4e-22
 Identities = 57/282 (20%), Positives = 125/282 (44%), Gaps = 13/282 (4%)

Query: 20  LAPW--HATPAASNWGSIDTTLFITLI-ISGIFFIAITVFMAVAVMRYRHKEGSRAHYQP 76
           +A W  + TP  +   +   +L +T++ I  +  + +   M  ++  +R  +G++     
Sbjct: 7   MADWTLNMTPGVTGTSNEIFSLHMTILWICVVIGVVVFGVMFWSIFAHRKSQGAKPANFH 66

Query: 77  ESKKLETWLIIVTSIGIAAMLAPGLVVYSDFINVPKNAYELEVVAQQWQWAFRFAGQDGK 136
           E+  +E    I+  + +  M  P      D  +  ++  ++++   QW+W + +  +D  
Sbjct: 67  ENTLVEILWTIIPFVILVVMAIPATATLVDMYDTSESEVDIKITGYQWKWQYEYINEDFG 126

Query: 137 LGKSDIKFVDFTNPLG-LDPKDPVGQDDVLIKSNEVRLPLDQPVKVLLRSKDVLHNFYIP 195
                  F +   P   ++ +   G++ +L   N + +P+ + ++ L+ + DV+H++++P
Sbjct: 127 Y------FSNLATPRDQIENRQAKGENYLLEVDNHLVIPVGKKIRFLVTANDVIHSWWVP 180

Query: 196 QIRSKMDMVPGMVSYFWFTPTKTGKYEILCAEYCGLGHYNMRGQMIVEEQGAFDQWLNSQ 255
               K D +PG ++  W    K G Y   C E CG  H  M   +    +  ++ W+  +
Sbjct: 181 DFGVKKDAIPGFINETWTRVDKPGIYRGQCTELCGKDHGFMPVVVEAVPEEEYNTWVAEK 240

Query: 256 PTFA--QTLTTAAKPSQDSVLEKGRLLVEKYGCGACHSQDGS 295
              A  +   T    +   ++E+G    +   C ACH  DGS
Sbjct: 241 KEAAERERQLTQKDWTMAELMERGEKAYQT-ACAACHQADGS 281



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 339 GYPPVMVAYTLTEDELGAVVALIKSLGAAQQEPSASEKLDRGDDLATQGQRLAESLGCLA 398
           G+ PV+V   + E+E    VA  K   AA++E   ++K     +L  +G++ A    C A
Sbjct: 219 GFMPVVVE-AVPEEEYNTWVAEKKE--AAERERQLTQKDWTMAELMERGEK-AYQTACAA 274

Query: 399 CHSVDGSKGVGPSWQGLYGETVTLAD 424
           CH  DGS G  P++  L G  +   D
Sbjct: 275 CHQADGS-GAPPAFPALKGSPIATQD 299