Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4

Subject, 1049 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella loihica PV-4

 Score = 1306 bits (3379), Expect = 0.0
 Identities = 655/1039 (63%), Positives = 814/1039 (78%), Gaps = 7/1039 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60
            M++FFIDRPIFAWVIA+++ML G LSI+KLP++QYPSIAPP + I+  YPGASA+T++DT
Sbjct: 1    MARFFIDRPIFAWVIAIIVMLAGVLSIMKLPVSQYPSIAPPTVVINAIYPGASAKTMEDT 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQ++ GID+LRY+SS S+S GN  IT TF    + D AQVQVQNKL LA PLLPQ
Sbjct: 61   VTQVIEQRMTGIDHLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQLAMPLLPQ 120

Query: 121  EVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180
            EVQ QG++V KS   FLMV+G VS+DGS+ K+D+S+Y+ SN+ DP+SR  GVG+ Q+FGA
Sbjct: 121  EVQAQGVKVNKSSSGFLMVLGFVSQDGSLEKNDISDYVGSNILDPMSRVPGVGEIQLFGA 180

Query: 181  QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
            QYAMRIWLDP KL  YNLT +D+  +I  QN QVS+GQLGG P++ GQ+LNAT+  ++RL
Sbjct: 181  QYAMRIWLDPLKLTQYNLTSLDIMASIREQNAQVSAGQLGGAPSIAGQELNATVTAQSRL 240

Query: 241  QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
            QTAE+F+ I++K +  G++V + DVA V LG E+YS+ + +NG PA+GLA+KLA GANAL
Sbjct: 241  QTAEEFRKIIIKSDPSGAKVYLEDVARVELGSESYSVESFYNGRPAAGLAIKLATGANAL 300

Query: 301  DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
             TA+ +R  +D +KPFFP+G+EVV+PYDTTP V +SI+GVV TL+EA+VLVF++M+LFLQ
Sbjct: 301  ATAERVREKVDEMKPFFPQGLEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFVIMYLFLQ 360

Query: 361  NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRAT+I T+ VPVVLLGTF IL+A GFSINTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
            SE+GLSP EATKKSM QI GALVGI L LSAV +PMAF SGSTGVIY+QFS+TIVSAMAL
Sbjct: 421  SEDGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSVTIVSAMAL 480

Query: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNILTHKAP 540
            SVLVA+I TPALCATMLK I KG H   + GFFGWFNR+FD+    YE GV  ++     
Sbjct: 481  SVLVAIILTPALCATMLKPIAKGHHAV-ETGFFGWFNRTFDKMTSRYEAGVAAMIKRAGR 539

Query: 541  YLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR 600
             +L Y+ + V + W+F R+PTAFLP+EDQG+LF Q   P  S+ + T+ V+ ++ +F L 
Sbjct: 540  VMLIYVALTVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTKKVMSKISDFYLN 599

Query: 601  PSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNA-DNSVFKLAARAQQHF 659
             +     GD+V SVF+V+GF+FAG GQ+ G+AF+ +K W ER      V  +A RA   F
Sbjct: 600  ET-----GDSVKSVFSVSGFSFAGSGQNMGLAFVGMKDWSERTGPGQDVKSVAGRAMGMF 654

Query: 660  FTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMAAQSKVLSQV 719
               ++A VFAF PPAV+ELG A GFD +LQDR G GHEKL+EARN  LGMA+Q+  L  V
Sbjct: 655  MQMKEAFVFAFVPPAVIELGTANGFDFYLQDRNGQGHEKLLEARNMLLGMASQNPNLVGV 714

Query: 720  RPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYIQGL 779
            RPNG  D P Y++ ID  K  AL + +  +N+ L  A G SYVNDFIDRGRVKKVY+QG 
Sbjct: 715  RPNGQEDAPMYRIHIDHAKLRALSIDIDAVNSVLGTAWGGSYVNDFIDRGRVKKVYVQGD 774

Query: 780  PGARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVEAMEILGAPAPGHS 839
               RM PEDL  WYVRNS G MVPFS+FA G W YGSP+L R+NG+ AM I G  A G+S
Sbjct: 775  AQYRMQPEDLDTWYVRNSQGEMVPFSAFATGTWEYGSPRLERFNGLPAMNIQGGTAQGYS 834

Query: 840  TGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWS 899
            TG AMA++EA+  KLP G G+ W GLSYEERLSG+QAPALYALS+++VFL LAALYESWS
Sbjct: 835  TGAAMADIEAMVAKLPPGFGVEWNGLSYEERLSGNQAPALYALSIMVVFLVLAALYESWS 894

Query: 900  IPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQG 959
            +P AV+LVVPLGIIGAL+A + RGL NDV+FQVGLLTT+GLA KNAILIVEFAKE +E+G
Sbjct: 895  VPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEKG 954

Query: 960  RSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMITATVL 1019
              L +A + A R+RLRPI+MTSLAF LGVVPLAIS+G GSGSQ+AIGTGV+GGM+++T L
Sbjct: 955  AGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTGVLGGMMSSTFL 1014

Query: 1020 AIFWVPLFFVTVSSMGQRK 1038
             IF++P+FFV V  +  ++
Sbjct: 1015 GIFFIPIFFVIVERIFSKR 1033



 Score = 44.7 bits (104), Expect = 4e-08
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 280  QFNGAPASGLAVKLANGANALDTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKG 339
            +FNG PA  +    A G +   T  A+ + I+ +    P G  V +         E + G
Sbjct: 816  RFNGLPAMNIQGGTAQGYS---TGAAMAD-IEAMVAKLPPGFGVEW---NGLSYEERLSG 868

Query: 340  VVETLVEA--IVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFG 397
                 + A  I++VFLV+    +++       + VP+ ++G    +   G   +     G
Sbjct: 869  NQAPALYALSIMVVFLVLAALYESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVG 928

Query: 398  MVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMA 457
            ++  +GL   +AI++VE  +    E+G    EAT  ++      ++  +L     ++P+A
Sbjct: 929  LLTTVGLATKNAILIVEFAKEFY-EKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLA 987

Query: 458  FFSGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAIPKGE 504
              SG            ++  M  S  + + F P     + +   K E
Sbjct: 988  ISSGVGSGSQNAIGTGVLGGMMSSTFLGIFFIPIFFVIVERIFSKRE 1034