Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4

Subject, 1044 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1298 bits (3360), Expect = 0.0
 Identities = 670/1047 (63%), Positives = 819/1047 (78%), Gaps = 12/1047 (1%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60
            M++FFIDRPIFAWVIAL+IML G LSI  LP++QYPSIAPP + IS  YPGASA+ V+D+
Sbjct: 1    MARFFIDRPIFAWVIALIIMLAGVLSIRTLPVSQYPSIAPPTVVISANYPGASAKIVEDS 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQ++ GID+LRY++S S+S GN  IT TF    + D AQVQVQNKL  A  LLPQ
Sbjct: 61   VTQVIEQRMKGIDHLRYIASTSDSFGNAEITLTFNAEADPDIAQVQVQNKLQGAMTLLPQ 120

Query: 121  EVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180
            EVQ QG+ V KS   FLMV+G VS DGS+ K D+++Y+ +N+QDP+SR  GVG+ Q+FGA
Sbjct: 121  EVQAQGVDVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANVQDPMSRVPGVGEIQLFGA 180

Query: 181  QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
            QYAMRIWLDP KL  YNLT ++V +AI AQN QVS+GQLGG P++ GQ+LNAT+  ++RL
Sbjct: 181  QYAMRIWLDPLKLTQYNLTSLEVISAIRAQNAQVSAGQLGGTPSIQGQELNATVSAQSRL 240

Query: 241  QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
            QT E+F+ I+LK +  G+ V +GDVA V LG E+Y++ + +NG PA+GLA+KLA GANAL
Sbjct: 241  QTPEEFRKIILKSDTSGANVFLGDVARVELGSESYAVVSFYNGKPATGLAIKLATGANAL 300

Query: 301  DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
            DTA+A+R+ ++ L+PFFP+G++VV+PYDTTP V +SI+GVV TL+EAIVLVF++M+LFLQ
Sbjct: 301  DTAEAVRDKVEELRPFFPQGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQ 360

Query: 361  NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRAT+I T+ VPVVLLGTF IL+A GFSINTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
            SEEGLSP EAT+KSM QI GALVGI L LSAV +PMAF SGSTGVIY+QFSITIVSAMAL
Sbjct: 421  SEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMAL 480

Query: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNILTHKAP 540
            SVLVALI TPALCATMLK + KG HG  + GFFGWFNR+FDR    YE  V  I+     
Sbjct: 481  SVLVALILTPALCATMLKPVQKG-HGHIETGFFGWFNRNFDRLTNRYESSVAGIVKRGFR 539

Query: 541  YLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR 600
             ++ Y+ +VV + W+F R+PTAFLP+EDQG+LF Q   P  S+ + T  V+D++ +  + 
Sbjct: 540  VMMIYVALVVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTLKVLDKVSDHFM- 598

Query: 601  PSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNADN-SVFKLAARAQQHF 659
             + EG     V SVF+V GF+FAG+GQ+ G+AF+ LK W ER A    V  +A RA   F
Sbjct: 599  -AEEG-----VRSVFSVAGFSFAGQGQNMGIAFVGLKDWSEREAPGMDVQSIAGRAMGAF 652

Query: 660  FTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMAAQSKVLSQV 719
               +DA VFAF PPAV+ELG A GFD++LQD+ G GH+KL+ ARNQ LGMAAQ+  L  V
Sbjct: 653  SQIKDAFVFAFVPPAVIELGTANGFDMYLQDKNGQGHDKLIAARNQLLGMAAQNPNLMGV 712

Query: 720  RPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYIQGL 779
            RPNG  D P YQL ID  K SALGV + ++N+ L+ A G SYVNDFIDRGRVKKV++QG 
Sbjct: 713  RPNGQEDAPIYQLHIDHAKLSALGVDIANVNSVLATAWGGSYVNDFIDRGRVKKVFVQGD 772

Query: 780  PGARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVEAMEILGAPAPGHS 839
               RM PEDL  WYVRN+ G MVPFS+FA G W YGSP+L R+NG+ A+ I GA APG S
Sbjct: 773  AQYRMQPEDLNTWYVRNNKGDMVPFSAFATGSWEYGSPRLERFNGLPAVNIQGATAPGFS 832

Query: 840  TGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWS 899
            TG AM  +E L K+LP G GI W GLSYEERLSG+QAPALYALS+L+VFL LAALYESWS
Sbjct: 833  TGAAMTIMEDLVKQLPPGFGIEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWS 892

Query: 900  IPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQG 959
            +P AV+LVVPLGIIGAL+A + RGL NDV+FQVGLLTT+GLA KNAILIVEFAKE +E+G
Sbjct: 893  VPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEKG 952

Query: 960  RSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMITATVL 1019
              L +A + A R+RLRPI+MTSLAF LGVVPLAISTG GSGSQ+AIGTGV+GGM+++T L
Sbjct: 953  AGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSSTFL 1012

Query: 1020 AIFWVPLFFVTVS---SMGQRKVADQD 1043
             IF+VPLFFV V    S  +RK  +++
Sbjct: 1013 GIFFVPLFFVIVERIFSKRERKAKEKN 1039