Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4

Subject, 1070 a.a., multidrug resistance protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 1310 bits (3389), Expect = 0.0
 Identities = 659/1039 (63%), Positives = 823/1039 (79%), Gaps = 7/1039 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60
            M++FFIDRP+FAWVIA++IML GALSIL LP++QYP IAP ++ IS +YPGASA+TV+DT
Sbjct: 1    MARFFIDRPVFAWVIAIIIMLAGALSILSLPVSQYPKIAPTSVNISASYPGASAKTVEDT 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQ++ GID+LRY+SS S++ G ++IT TF+  T+ D AQVQVQNKL LATP+LP+
Sbjct: 61   VTQVIEQKMKGIDSLRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQNKLALATPMLPE 120

Query: 121  EVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180
             VQ+QGI V KS  +FLM+I + S D S+T  DLS+Y  + + DPISR  GVG+ Q+FGA
Sbjct: 121  AVQRQGITVNKSTSSFLMIIALASDDPSLTGRDLSDYAATYLLDPISRVDGVGETQLFGA 180

Query: 181  QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
            QYAMR+WLDP KL NY +TP DV++AI AQN Q+S GQ+GG PA+PGQ ++ TI+ ++ L
Sbjct: 181  QYAMRVWLDPHKLMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQGMSFTILSQSLL 240

Query: 241  QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
            QT EQF+ I+L+V +DGS VR+ DVA V LG ENY   + FNG P++G+A+KLA GANAL
Sbjct: 241  QTREQFERIVLRVEQDGSTVRLADVARVELGSENYDAVSHFNGKPSTGIAIKLATGANAL 300

Query: 301  DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
            DT K +R T++ L    PEG+  VFPYDTTP V  SI+ VV+TL EAIVLVFLVM+LFLQ
Sbjct: 301  DTVKRVRTTMEGLAKNLPEGIRCVFPYDTTPFVRVSIEEVVKTLAEAIVLVFLVMYLFLQ 360

Query: 361  NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N RAT+I T+ VPVVLLGTFG LAAFGFSIN LTMFG+VLAIGLLVDDAIVVVENVER+M
Sbjct: 361  NIRATIIPTIAVPVVLLGTFGALAAFGFSINMLTMFGVVLAIGLLVDDAIVVVENVERIM 420

Query: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
            +EEGL P+EAT+KSMG+I GALVGIALVLSAV +PMAF  GS+GVIY+QFS+TIVSAM L
Sbjct: 421  TEEGLPPREATRKSMGEITGALVGIALVLSAVFIPMAFIKGSSGVIYRQFSLTIVSAMTL 480

Query: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNILTHKAP 540
            SV+VAL+ TPALCAT LK + K EH   + GFFGWFNR FDR  + Y + V  +      
Sbjct: 481  SVVVALVLTPALCATFLKPLHKHEH-QAQGGFFGWFNRMFDRTSRGYRKQVTGVTGRVGR 539

Query: 541  YLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR 600
             +  Y +++ G  +LF R+PT+FLPEEDQGV+F+ VQ P GS  ++T  V+ ++    L 
Sbjct: 540  TMCIYALLLAGTAFLFMRLPTSFLPEEDQGVIFSLVQLPTGSPQEKTLEVLKKLEHHYL- 598

Query: 601  PSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNADN-SVFKLAARAQQHF 659
                  E + V S+FTV GF+FAGRGQ++G+AF+ LKPW+ER  +  S   +A RA + F
Sbjct: 599  ----VDEKETVNSLFTVAGFSFAGRGQNAGLAFVQLKPWDERKGEGMSAAAVAGRAMRAF 654

Query: 660  FTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMAAQSKVLSQV 719
               R+++V+AF PPAV ELGNA+GF++FLQDR G+GHE LM+ARNQ LGMAAQ+  ++ +
Sbjct: 655  SRIRNSVVYAFTPPAVQELGNASGFNLFLQDREGVGHEALMQARNQLLGMAAQNPAIAVL 714

Query: 720  RPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYIQGL 779
            RPNG+ D PQ+++++D  KA A G+T+ D+N  LS ALG +YVNDFIDRGRVKKVY+QG 
Sbjct: 715  RPNGMEDTPQFRIDVDAAKAGAHGLTMADVNGVLSTALGGAYVNDFIDRGRVKKVYLQGD 774

Query: 780  PGARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVEAMEILGAPAPGHS 839
               RM PED+  W+VRN+ G MVPFS+F+   W YGSP+L RYNG+ A+E++G+ APG S
Sbjct: 775  APFRMMPEDINAWHVRNAQGNMVPFSAFSTASWTYGSPRLERYNGLPAVELVGSAAPGKS 834

Query: 840  TGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWS 899
            TGEAM  VE +A KLP GVGISWTGLSY+ER+SGSQAPALYA+S+L+VFLCLAALYESWS
Sbjct: 835  TGEAMQAVEDMAAKLPPGVGISWTGLSYQERMSGSQAPALYAISILVVFLCLAALYESWS 894

Query: 900  IPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQG 959
            +P AV+LVVPLGIIGALMAT  RGL+NDV+FQVGLLTTIGLAAKNAILIVEFA  L + G
Sbjct: 895  VPTAVILVVPLGIIGALMATLGRGLNNDVFFQVGLLTTIGLAAKNAILIVEFAMHLVKSG 954

Query: 960  RSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMITATVL 1019
            R L DA  EA R+RLRPI+MTSLAF+LGV+P+AISTGAGSGSQ AIGTGV+GGM +ATVL
Sbjct: 955  RPLLDATAEAARLRLRPILMTSLAFLLGVLPMAISTGAGSGSQRAIGTGVMGGMFSATVL 1014

Query: 1020 AIFWVPLFFVTVSSMGQRK 1038
            A+++VP+FFV V     RK
Sbjct: 1015 AVYFVPVFFVMVYRFAMRK 1033



 Score = 48.9 bits (115), Expect = 2e-09
 Identities = 51/239 (21%), Positives = 104/239 (43%), Gaps = 14/239 (5%)

Query: 280  QFNGAPASGLAVKLANGANALDTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKG 339
            ++NG PA  L    A G +  +  +A+ +    L P    G+ + +   T     E + G
Sbjct: 816  RYNGLPAVELVGSAAPGKSTGEAMQAVEDMAAKLPP----GVGISW---TGLSYQERMSG 868

Query: 340  VVETLVEAI--VLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMF- 396
                 + AI  ++VFL +    +++       + VP+ ++G   ++A  G  +N    F 
Sbjct: 869  SQAPALYAISILVVFLCLAALYESWSVPTAVILVVPLGIIGA--LMATLGRGLNNDVFFQ 926

Query: 397  -GMVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLP 455
             G++  IGL   +AI++VE    ++ + G    +AT ++       ++  +L     +LP
Sbjct: 927  VGLLTTIGLAAKNAILIVEFAMHLV-KSGRPLLDATAEAARLRLRPILMTSLAFLLGVLP 985

Query: 456  MAFFSGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAIPKGEHGTPKRGFFG 514
            MA  +G+     +     ++  M  + ++A+ F P     + +   +   G P+ G  G
Sbjct: 986  MAISTGAGSGSQRAIGTGVMGGMFSATVLAVYFVPVFFVMVYRFAMRKRGGGPEGGGHG 1044