Pairwise Alignments

Query, 302 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N1B4

Subject, 304 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  162 bits (409), Expect = 1e-44
 Identities = 95/302 (31%), Positives = 161/302 (53%), Gaps = 3/302 (0%)

Query: 1   MSEMDDLAAFAVLIEAGSFTLAAQQLGCSKGQLSKRISLLETRFSVVLLQRTTRRLSLTA 60
           +  +D + AF  +++ GSFT AA +LG S   +SK +S LE    V LL RTTRR+++T 
Sbjct: 3   LDRIDTMKAFTAVVQEGSFTKAADRLGLSSQLVSKYVSQLEEHLKVRLLNRTTRRVNVTE 62

Query: 61  AGAALLPQAQALVIQVERARQALARLKDDMAGPVRMTVPVSLGETFFDGALLEFSRQYPE 120
           AG A   + Q ++I +E    AL  L +  +G ++++ P+S G      AL++F +Q+P+
Sbjct: 63  AGRAYFERCQQVLIDIEEMDNALTNLSETASGLLKVSAPMSFGIHHLPSALVQFQQQHPD 122

Query: 121 VQIELELNNNYRDLSRDGFDLAIRSEVANDERLVARPLLAWHEMTCASPAYLERFGEPLT 180
           V++++ L +   DL  DG D+A+R        L+A+ L     + CASP YL   GEP T
Sbjct: 123 VRLDITLTDKKVDLLEDGVDVALRIGQLTSSSLIAKKLTPIKLVVCASPEYLAERGEPKT 182

Query: 181 PQALAEHRCLLNSHYSGREEWLYHQQHELLRVRVSGPFASNHYNLLKKAALSDAGIARLP 240
           P  L  H   L+  YS               +++    A N+ ++L +AA++  GI   P
Sbjct: 183 PADLIHHN-YLHFSYSDLGAAFGRFGEHFSALKIPSDLACNNGDMLVEAAIAGRGIVVQP 241

Query: 241 SYLLQEELADGRLRWLLRDYQTRSMPMYLVHPYQGGLPKRTQVLADYLIGWFKRS--GEA 298
           ++L+ + L  G+L+ +L DY      +Y V+ ++  L  + +   D L  ++ ++   +A
Sbjct: 242 TFLVSKALRSGKLKAILTDYTPEPFGLYAVYVHRKFLASKVRCFVDALSQYYGKTPYWDA 301

Query: 299 LD 300
           LD
Sbjct: 302 LD 303