Pairwise Alignments

Query, 342 a.a., Mobile element protein from Pseudomonas fluorescens FW300-N1B4

Subject, 337 a.a., transposase IS116/IS110/IS902 family protein (RefSeq) from Shewanella loihica PV-4

 Score =  191 bits (486), Expect = 2e-53
 Identities = 118/333 (35%), Positives = 180/333 (54%), Gaps = 4/333 (1%)

Query: 4   VAIAAIDLGKHTFHLHAQDDRGHEVYRKKFTRTALTRHLANLAPCTVVMEACGGAHFMAQ 63
           V +  IDL K+   +   +  G  ++ +   RT L + L       + MEAC G+++  +
Sbjct: 3   VTLIGIDLAKNVLQVCGVNQVGKTLFNRTVKRTQLLKTLVQYPDAVIAMEACSGSNYWGR 62

Query: 64  EVAKLGHTPKLIAPHLVRPYVKSNKNDFADAEAICEAATRPTMRFVPPKTQAQQALAMSN 123
           E+   G   KLI P  V+P+VK NKND  DA AICEAA RP + FV P+T AQ  + +S+
Sbjct: 63  ELLSRGFEVKLIPPQHVKPFVKGNKNDRNDAFAICEAAMRPNIIFVKPRTLAQVDIIISH 122

Query: 124 SLRESFIKDRTATVNRIHAALLEVGVSLAPGFKTIK-ELPALLE--VSSFSERIKKNLML 180
            +RE  I+ RTA  N+I   L E G+ +  G   +   LP LLE   +S +   ++ +  
Sbjct: 123 RIRERRIRVRTALTNQIRGLLSEYGIVIPKGRDPLNLALPELLEDADNSLTTTARRYIRE 182

Query: 181 LHGHFNYLDGQVKSLDKEVECQAAEDDLAARLMTMPCVGPITSSALAAELGDGKQFKCGR 240
           L      ++  +K+L+KE+  QA   +   RL  +  V  I ++A  +  GDG  ++ GR
Sbjct: 183 LLDELYAINASIKALEKEIRLQARNHEDTKRLTAIRGVAEIIATASVSFAGDGSGYQNGR 242

Query: 241 GYAASIGLVPKQHSTGDKTVLLGISKRGDRNQRRLLIQCARVYLMQLDRQKGALADWVRQ 300
            ++A++GLVPK+ S+G K  L  I+KRG+   RR LIQ A   +         L+ W R+
Sbjct: 243 HFSANLGLVPKEFSSGGKQKLGAITKRGNSYLRRQLIQGAWSVIRYAKNNDDRLSVWARK 302

Query: 301 LLASRHHSNLVVCALANKLARIAWAIAAHHTEF 333
           ++  R      V A+ANKLARI WA+  + TE+
Sbjct: 303 VIERRGKQKAAV-AVANKLARIIWAMLYYKTEY 334